Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00030 ATGCAAACTCACCCTTTCTCCTACATATCTTCCTGTCCTGGAAGTAGTGCCTTCTTGGAACCTCATCATCACCATCATCATCATCATCAAGAGCCTGTGGATGAAGCTTCCATTTCCCTCTCTCTTGGCCCTCCTGGCCAACTGCACCACCACCCCAAAGGCACTTCCTCCTCCTCAAACCTCCCTTCCACTCTGCACCATCATCACCATAACCCTACCTCTGATGACCAGAGAGGCGTAACTGTGGCCCTTCACATTGGCCTTCCCAATCCCGCCGCTTCACCCAACAGTCCTACCACCACCACCACCACCACCACCACCACCACCAAGCCTGATCTTCATTTGACTTCTGCTCCCACTCAAGGCCAGTACTGGATCCCTTCTCCGGCTCAAATCCTCATCGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCACAATATAGGAAAGGACCTGAATCACTGAGAGGAGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAGACCATCCAAGGTCAAGGCCATTGAAGGACTTCAGGACTCTTCAAACTCATTACAAGAGGAAGCACGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGTGGTAAGCTTTGGTTCTGCATCTGCGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCACACACTGTCGAGAGTTGTGATCAGATTGGGGAGGATGACTTGTTCGGTGACGAAGATGAAGAGGAGTTAGATTTAGAAGATGATGATGAAGGTTATAACAGTAATGAAGTGGTTTTTGGTTTTAATTAA 960 0.4927 MQTHPFSYISSCPGSSAFLEPHHHHHHHHQEPVDEASISLSLGPPGQLHHHPKGTSSSSNLPSTLHHHHHNPTSDDQRGVTVALHIGLPNPAASPNSPTTTTTTTTTTTKPDLHLTSAPTQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLFGDEDEEELDLEDDDEGYNSNEVVFGFN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00030 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Vimu7g00030 319 PANTHER ZINC FINGER PROTEIN WIP2 22 293 IPR043584 GO:0003700|GO:0010468
Vimu7g00030 319 MobiDBLite consensus disorder prediction 51 67 - -
Vimu7g00030 319 MobiDBLite consensus disorder prediction 19 118 - -
Vimu7g00030 319 FunFam Zinc finger protein WIP2 193 275 - -
Vimu7g00030 319 SUPERFAMILY beta-beta-alpha zinc fingers 121 160 IPR036236 -
Vimu7g00030 319 Gene3D Classic Zinc Finger 180 271 - -
Vimu7g00030 319 MobiDBLite consensus disorder prediction 92 118 - -
Vimu7g00030 319 SUPERFAMILY beta-beta-alpha zinc fingers 207 244 IPR036236 -
Vimu7g00030 319 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00030 Vimu-Chr7 358106 359698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00030 34 280 C2H2 Transcription Factor Family AT1G13290 70.968 1.49e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00030 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00030 7 358106 359698 Vimu7g00030 7 358106 359698 ECH