Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00004 ATGGAACCTCTTACTTACCTCTTCTTTCCTCTTTTTCTTCTCGCCTGTTTCTCTCCGTTAACGCTCTCTCGAACCACACGGCACACTCCCAAAACGACACTCCTCGACGTCGTTTCCTCGCTTCAAAACGCGCACAATGCCGTCGCTTCACCCCATTACCACCCTCTCCAACAACAGCAAGAACCCTCTCCTCTATCGTCGTTCGCTGTTCAGCTACATTCCCGTGCCTCAATTCAAAAACCCTCGCACAGCGATTATAAATCCCTAACCCTTTCTCGTCTCGAACGCGACTCGGTCCGAGTCAGGGCTCTGCAAACTCGTTTAGATCTTGCTCTGAACCGCGTCTCTAACTCGGATCTCCTCCCGGCCGAGTCACGCCCCGAGTTCGAAGCCAACGCGCTCCAGGGCCCAATCGTCTCGGGAACTAGTCAGGGAAGCGGTGAGTACTTCCTTCGAGTTGGAATCGGAAAGCCAGCTAGTCAAGCCTACGTGGTTCTTGACACAGGAAGCGACGTCAGTTGGATCCAATGCGAGCCATGCTCTGAATGCTACCAACAATCCGACCCGATATTTAGCCCGCTTTCGTCCTCTTCCTACTCGCCGATCCACTGCGACGCCCCGCAGTGTAAATCCCTCGACCTCTCCGAGTGCCGCAACGGAACCTGCCTCTACGAAGTCTCATACGGGGACGGATCTTACACTGTGGGCGAGTTCGCAACGGAGACCGTCACTCTCGGCGCGTCGGCAGTATCCGGCGTCGCCATTGGCTGCGGCCACAACAACGAAGGACTATTCGTTGGCGCCGCTGGTCTGCTCGGTCTCGGCGGCGGAAAGCTCTCGTTTCCGGCGCAGGTCAATGCGACTTCGTTTTCATACTGCCTCGTGGACCGTGACTCCGACGCCGTTTCCACTCTTGAATTCGACTCGCCGATGCCGCGCAACGCTGTCACCGCGCCGCTGTTGCGGAACCCCGAGCTCGACACGTTCTATTACCTCGGCTTGAAAGGAATCAGCGTCGGCGGAGAGACTCTACCGGTACCTGAGTCGAGCTTTGCTGTCGATGCCACCGGAGGAGGCGGCATCATTGTCGATTCCGGCACGGCCGTGACAAGGCTACGGAACGAGGTGTACGACGCGCTCCGCGACGCGTTCGTGAGGGGGGCGCAAGGGTTGCCGAAGGCGAACAGTGTGTCATTGTTCGACACGTGCTATGACTTGTCGTCGAGGAACACTGTGGAGGTGCCGACGGTGTCGTTTCATTTTCCTGAGGGGAGGGAGTTACCGTTACCGGCGAAGAATTACCTGATACCGGTTGATTCGGTGGGGACATTTTGCTTCGCGTTTGCAGCAACGACGTCGTCGTTGTCAATCATTGGGAACGTGCAGCAACAAGGGACACGTGTCGGTTTCGATATTGGTAACTCGCTCGTTGGATTCTCTGCCAACAGCTGCTAA 1455 0.567 MEPLTYLFFPLFLLACFSPLTLSRTTRHTPKTTLLDVVSSLQNAHNAVASPHYHPLQQQQEPSPLSSFAVQLHSRASIQKPSHSDYKSLTLSRLERDSVRVRALQTRLDLALNRVSNSDLLPAESRPEFEANALQGPIVSGTSQGSGEYFLRVGIGKPASQAYVVLDTGSDVSWIQCEPCSECYQQSDPIFSPLSSSSYSPIHCDAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGASAVSGVAIGCGHNNEGLFVGAAGLLGLGGGKLSFPAQVNATSFSYCLVDRDSDAVSTLEFDSPMPRNAVTAPLLRNPELDTFYYLGLKGISVGGETLPVPESSFAVDATGGGGIIVDSGTAVTRLRNEVYDALRDAFVRGAQGLPKANSVSLFDTCYDLSSRNTVEVPTVSFHFPEGRELPLPAKNYLIPVDSVGTFCFAFAATTSSLSIIGNVQQQGTRVGFDIGNSLVGFSANSC 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00004 484 Gene3D Acid Proteases 124 307 IPR021109 -
Vimu7g00004 484 FunFam Aspartyl protease family protein 2 308 484 - -
Vimu7g00004 484 ProSiteProfiles Peptidase family A1 domain profile. 149 480 IPR033121 -
Vimu7g00004 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 164 175 IPR001969 GO:0004190|GO:0006508
Vimu7g00004 484 Pfam Xylanase inhibitor C-terminal 330 480 IPR032799 -
Vimu7g00004 484 Pfam Xylanase inhibitor N-terminal 149 306 IPR032861 -
Vimu7g00004 484 Gene3D Acid Proteases 308 484 IPR021109 -
Vimu7g00004 484 FunFam aspartyl protease family protein 2 126 307 - -
Vimu7g00004 484 CDD cnd41_like 148 484 IPR033873 -
Vimu7g00004 484 SUPERFAMILY Acid proteases 142 484 IPR021109 -
Vimu7g00004 484 PANTHER ASPARTYL PROTEASES 38 478 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00004 Vimu-Chr7 52694 54148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00004 139 484 Miscellaneous Gene Families AT1G77480 24.737 1.30e-21 95.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00004 7 52694 54148 Vimu7g00004 7 52694 54148 ECH