Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04164 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAGCCAAATCATCAGCAGCAACCCAACAACACTGTTGTCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCACCTCCACCATCGCAACCCCATGGACTCGGTGGTAGTGCCACTGCCGGCTCCATCAGGCCGGGTTCCATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCACAGAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACTCGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGTGGCGGCTGCAGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCGCCTGCAAACTCGGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACAACCAGTGGCTCCTCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGAGTGCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCAACTCGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGATTAAACTATGGTTTGAACTATGGCTCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTCCATATTGGAAACGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCGACTTCTGGGGTGATGTCTCAGTTTGCTTCTGTCAAAATGGAAGATAATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGAGCAATATTGGAGTGGTGGTGCTGCTGCTGCTGCTACTTCTGCTTGGACCGATCTTTCTGCTTTCAGCTCTTCTTCCACTACTAGTAATCCCCTATAG 1104 0.5217 MVYTSIPAYIDPANWQQQQPNHQQQPNNTVVSSHLILPPPIQPPPPPPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHQLGGGGGGGGGGEIGLNYGLNYGSISGPMGGIGDLNFHIGNALNGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHQELGLPRQFLGVNNNPNTNEQYWSGGAAAAATSAWTDLSAFSSSSTTSNPL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04164 367 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 167 IPR045174 GO:0003700|GO:0006355
Vimu6g04164 367 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Vimu6g04164 367 MobiDBLite consensus disorder prediction 129 178 - -
Vimu6g04164 367 MobiDBLite consensus disorder prediction 37 53 - -
Vimu6g04164 367 MobiDBLite consensus disorder prediction 139 175 - -
Vimu6g04164 367 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Vimu6g04164 367 MobiDBLite consensus disorder prediction 33 66 - -
Vimu6g04164 367 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04164 Vimu-Chr6 42818353 42819624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04164 1 360 C2C2-Dof Transcription Factor Family AT2G37590 40.476 1.09e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu6g04164 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04164 - - gmx:100796820 538.495