Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03350 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTGCAGCAGCATAAAAAAGGAGGAGGAACTGGGAAGAACCAATGAATGTGGAGAAAACTCAAACTCTGAAAAACAAGAAAACTCTTCTGATTCAAGGGATAGTAAACAAGAGTTAGAGCATAAAGTGCAGGAAAATGAGGCAATAGTAAATCCCAAACCCGTGGAAGATAACACGGAGAATGGTGGCTCAGACCAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCGGTGTCCACGATGTAACAGTTTGGACACCAAGTTTTGTTATTTTAACAACTACAACGTTAACCAACCTAGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAACAAACACCTAGCTTCTCAATACCGACACATTATTGTATCCTCTAATGGAATTCCTTCCTCCAGACTAGAAACTGAGGACGCATCTGGTTTCCAACATGTCACAAGTCTTGAATCCTCAGTTCCTTTCAGGTCTGCTGCAGATAGCAGCACTGTTTTGAAATTTGGGCCAGATACCCCTCTTTGTGAATCAATGGATTCAATGCTTAATCTTAGAGACGAGAGAAGATGTGTTGATGCAAGTTCTATAAACCGTGCAGAGTATGCTGGGGAACCATCGTTATGTGGATCTTCTGTGACGAACAATGCTACTCAGGGAAATGAATTATCAGAACACAAGACATCAAATTGGTTACAATGCTACCCTGTTCCTCCATGGGTGTTAACTTATCCAGGTTGGAATAATGTGAGTTCCGTGGAAGCAGTTCATCAGTCTTCAGCACCAATGTGTAGTCCATACAACACTGGTCCTGGAGCAATGCAATGGTGTCCCACAGCAATGGTGGCAATTCCTGGCATGTGCCCACCCAGTATTCCTTTTCAGGTTGTTCCACCATCATGCTGGAGTGGAACACCGCTTTGGAATGGAACTGGAGCAGTGTCCATAGGATCCAATGCTTGCCTTTCGCCATCGTCCTCCACCAGTAACAGTTGCTGCTCAGGCAATGCCTCCCCAACCCTTGGAAAACATGCTAGAGACACTGTTTTTGCTGATGAAGAGAAATCAGAGAAGTGTGTTTTGGTCCCAAAGACCATCAGAACTGATGCCTCTAACGAGGCCTCAAAAAGTCCTATAAGGGCTGCATTAAGCATCAAGCCTGATCAACAGCATTCTCTGTCAAATGGTGATGTTTTGAAGAAAATTGAACCAAAAGAAGGCAAAGATCGCGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGACCATATAG 1446 0.4474 MSQTEKDPGIRLFGRKIPVPECQIPANSGPTDACSSIKKEEELGRTNECGENSNSEKQENSSDSRDSKQELEHKVQENEAIVNPKPVEDNTENGGSDQDKVLKKPDKILRCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVSSNGIPSSRLETEDASGFQHVTSLESSVPFRSAADSSTVLKFGPDTPLCESMDSMLNLRDERRCVDASSINRAEYAGEPSLCGSSVTNNATQGNELSEHKTSNWLQCYPVPPWVLTYPGWNNVSSVEAVHQSSAPMCSPYNTGPGAMQWCPTAMVAIPGMCPPSIPFQVVPPSCWSGTPLWNGTGAVSIGSNACLSPSSSTSNSCCSGNASPTLGKHARDTVFADEEKSEKCVLVPKTIRTDASNEASKSPIRAALSIKPDQQHSLSNGDVLKKIEPKEGKDRVLGASQILEANPAAISRAHAFQETI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03350 481 MobiDBLite consensus disorder prediction 1 101 - -
Vimu6g03350 481 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Vimu6g03350 481 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
Vimu6g03350 481 MobiDBLite consensus disorder prediction 58 79 - -
Vimu6g03350 481 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
Vimu6g03350 481 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03350 Vimu-Chr6 30053262 30055560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03350 7 480 C2C2-Dof Transcription Factor Family AT5G39660 35.272 2.21e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu6g03350 zf-Dof 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03350 - - gmx:100813787 811.601