Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03062 ATGGGTGAACGATGTCATTCAGATGCTCCCTTAGATACTATTTCCAGTGGGAGTGAGGAACACTTGATCTCTCGTTTACCAAAAGAATGTAAGATTGGATCCATTAGTTTGGATGAAAATGATGATGATTATCCTGTGCCACGACCTGGAATGATCTTTAGGTCAGAAGCTGAGGCAAGATTGTATTACACAAAATATGCCGACCAAATGGGCTTCAGCGTCAAGACTAGAACCTCAAAAAGAGGAGGTGAAGGCCAAGTTAAATATTTGATACTTGTATGTTCCGAGAGATCAAGAACTGGTATTGATGAATCAAAGAAACAGTATTGTACTGCTAGGATAAATTTGACTTTACGTAAAGATGGAACCTATCAAATTAGTGCAGTTACTCTCGGTCATAATCATGAATTGGGTTCTCAGAGAATTACTATTAAGATGAAGTGTATAAGGAGATTGGATCCAGAAGTTATTGACATGGGTGTTAAGAAGACGTCAGAGCAAAATAATTGCGGAAATTACCTTCAGACAGAAAGACAGTGGATTAGAGAAAATGGAGATGGTGATGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGCAATCGACTTGGATGATTTGTTCAGCGCGAAGAATGTATTTTGGTCTGATGGAAGGAGTAGAGCTGCATATGAATCTTTTGGTGATGTGGTGACAGTTGATACTACATGCCTTTCCAATCACTACAAAGTGCCACTTGTAACTTTCATTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGTTGTTATCATCTGGCGACTCAGAGTCATTTGCTTGGTTGTTCGAATCATTGTTGCATTGCATGTCTGGTGTACCCCCACAAGGAATCGTAACAGATCATTGCTGCATGGCCATGCAGAAAGCAGTTGAAACCGTATACCCCTCCATTCGACATCGATGGTGTTTGTCAAATATAATGGAAAAGCTTCCCCAACTAATCCATCAGTATGCTAATTGCAAGTCCTTAAGAGATCGTATGCATAATGTTGTCTATGACACACCAACAACAGATGAATTTGAGGGAAAATGGAAGAAGATTGTGGACGATTTTGACCTCAAAGACAATAAATGGTTGAAGGAATTGTTCCTTCACCGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGGTTTTTGGGCTGGAATGTATACTAATCCGCAAAGTGAAAGTAGGCATGAAATTTTTGACGGATTTATAAACCAACAAACAACTTTGAAGCAATTTGTTGATCAGTACAATAATGCCTTGCAGTATAAGGCTGAGAAGGAGTATATAGCTGACATACATTCATCCAGTAATAGTCAGACCTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAATCTGCTTACACTCATGCAAAGTTTCTGGAGGTTCAACGTGAATTTGTTGGAAAGGCTGATTGTAACGTCTTTGTTGCTTCTGAAGATGGTTCTATTTGTCGCTACAATGTGATAGAGGATATGATAACAGAGGATAAGCCCAAGGAATCCGTGGTCGAAGTCATATATAACAGGGAAGATTGTGATATAAAATGCAACTGTGGCTTGTTTGAGTTTAGAGGTATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTAAAGGAGGTCCCGTGTAAATATATTTTAGACAGATGGAGGAAAAATATTGTGAGGAAGCATGTTTGTATAAAAACCAGCTACGGTGTTGTGCATTTTGAACCGCAAGTGCAGAGGTTTGATCTGTTATGCAAACAATTCAATAGTATTGCTGCTGCTGCTGCTGAATTTGAGGGTACAAGTTCTTTTGTAAAGGATACCCTATGTAACTTGAAGGAGAAACTTGACTCATGGACATCGTTACCGATAACCTCTTCTCTTGTGGATGTAGAGAAACACAATAATATGATACATTGA 1971 0.3952 MGERCHSDAPLDTISSGSEEHLISRLPKECKIGSISLDENDDDYPVPRPGMIFRSEAEARLYYTKYADQMGFSVKTRTSKRGGEGQVKYLILVCSERSRTGIDESKKQYCTARINLTLRKDGTYQISAVTLGHNHELGSQRITIKMKCIRRLDPEVIDMGVKKTSEQNNCGNYLQTERQWIRENGDGDALQKYLVRMQEQDRNFFYAIDLDDLFSAKNVFWSDGRSRAAYESFGDVVTVDTTCLSNHYKVPLVTFIGVNHHGQSVLFGCGLLSSGDSESFAWLFESLLHCMSGVPPQGIVTDHCCMAMQKAVETVYPSIRHRWCLSNIMEKLPQLIHQYANCKSLRDRMHNVVYDTPTTDEFEGKWKKIVDDFDLKDNKWLKELFLHRHRWAPSFVRGGFWAGMYTNPQSESRHEIFDGFINQQTTLKQFVDQYNNALQYKAEKEYIADIHSSSNSQTCVTKSPIERQFQSAYTHAKFLEVQREFVGKADCNVFVASEDGSICRYNVIEDMITEDKPKESVVEVIYNREDCDIKCNCGLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIVRKHVCIKTSYGVVHFEPQVQRFDLLCKQFNSIAAAAAEFEGTSSFVKDTLCNLKEKLDSWTSLPITSSLVDVEKHNNMIH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03062 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 634 IPR031052 GO:0006355
Vimu6g03062 656 Pfam MULE transposase domain 236 330 IPR018289 -
Vimu6g03062 656 Pfam SWIM zinc finger 531 555 IPR007527 GO:0008270
Vimu6g03062 656 Pfam FAR1 DNA-binding domain 62 137 IPR004330 -
Vimu6g03062 656 ProSiteProfiles Zinc finger SWIM-type profile. 520 558 IPR007527 GO:0008270
Vimu6g03062 656 SMART 26again6 533 560 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03062 Vimu-Chr6 26934970 26938105 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu6g03062 MULE 4.7e-24 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03062 6 26934970 26938105 Vimu6g03062 6 26934970 26938105 ECH