Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01861 ATGTCCACTGCGAGAGTTCAAGTTTCGGCGTGTGCGCTTTCAGCTGCCGTCAACAACCGCCGTCTCCGGCCAACCGCCGTCGTTTCCTTCACCAACCATTTTAGGAAGAAGTCTCTGAGGGTGGTGTCAATGTCGTCCGTTCCCCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACTACACCCAATAGGCTCGGCGACTGTCCCTTTTGCCAAAGGGTATTACTAACACTGGAAGAAAAAAATCTACCTTATGAACCCAAGTTGGTGGATTTCAGCAACAGACCAGAATGGTTCCTTAAAGCCAATCCTGATGGTAAAGTTCCTGTCATAAAGTTTGATGAGAAGTGGGTTCCGGATTCTGATGTTATTACTCAAACATTGGAAGAGAAGTATCCTATCCCACCATTGGTGACCCCACCTGAAAAGGCCACAGTAGGTTCAAAGATATTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCACTACTAAGTGAACTGAGCTCTTTCAATGATTACATAAAGGAAAATGGCCCTTATATCAACGGTAATGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTGGAGATTGCTCTGGGGCATTATAAGAAATGGACAGTACCTGATTCACTTACCTCTTTGAAGGCTTACACGAAGGCCATTTTCTTGAGGGAATCGTTCATTAAAACAAGTGCACAACCGCAGGATGTCATTGAAGGAATCCGAGGTTCCAAACCCTCAATCAAACAAACTCTGCAACTAACTTTAATGGCTTCTGGAGACTTCATTAATAAATCTCTCTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCAGTTGAGGCACTCAATGACGGGAATGGTTCGAATAAAACATCAATTTCGAAGTACATAGAATCAAGGTACGGTGTGTTGCCTCCGGGCCACAAGGTACTGCTCAATGTACACCTTGCAAAAATGAGGGACAGTGGGCTGCTTGACTTTTGGAAGAATAACTACACCAAGCGTGACCCAAACGCGCCGCCGCGGCGTGGCCGTGGCAGGCCACCCAAGCCCAAGGAGCTTCTGCCTCCAGGCATTGTCCTGTCACCGCCCAGGCCCAGGGGCCGCCCCCCAAAGGGCCCAAGTGACATGCAAAGGCCACCCAAAGCCACCACTGGGAGTGGCAGGCCCAGAGGCCGGCCTAGGAAGATGGCACGGCCAGCCGGAGGATTTGGGGAAACATCGGCTTCCTCGTTGAAGCCCAGCGCGAGGCCCAGAGGAAGGCCTCCGAAAGTGAAGCCCGAATTGATATAA 1341 0.4914 MSTARVQVSACALSAAVNNRRLRPTAVVSFTNHFRKKSLRVVSMSSVPPSQPFEIAVKASVTTPNRLGDCPFCQRVLLTLEEKNLPYEPKLVDFSNRPEWFLKANPDGKVPVIKFDEKWVPDSDVITQTLEEKYPIPPLVTPPEKATVGSKIFSTFIGFLKSKDPNDGTEQALLSELSSFNDYIKENGPYINGNEISAADLSLGPKLYHLEIALGHYKKWTVPDSLTSLKAYTKAIFLRESFIKTSAQPQDVIEGIRGSKPSIKQTLQLTLMASGDFINKSLSLPPYPEMILEAVEALNDGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDSGLLDFWKNNYTKRDPNAPPRRGRGRPPKPKELLPPGIVLSPPRPRGRPPKGPSDMQRPPKATTGSGRPRGRPRKMARPAGGFGETSASSLKPSARPRGRPPKVKPELI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01861 446 FunFam Glutathione S-transferase DHAR3 chloroplastic 51 139 - -
Vimu6g01861 446 MobiDBLite consensus disorder prediction 345 446 - -
Vimu6g01861 446 MobiDBLite consensus disorder prediction 367 393 - -
Vimu6g01861 446 Pfam linker histone H1 and H5 family 285 345 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu6g01861 446 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 60 138 IPR004045 -
Vimu6g01861 446 PRINTS AT-hook-like domain signature 378 389 IPR017956 GO:0003677
Vimu6g01861 446 PRINTS AT-hook-like domain signature 358 368 IPR017956 GO:0003677
Vimu6g01861 446 PRINTS AT-hook-like domain signature 402 412 IPR017956 GO:0003677
Vimu6g01861 446 SMART h15plus2 281 347 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu6g01861 446 SUPERFAMILY Thioredoxin-like 69 135 IPR036249 -
Vimu6g01861 446 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 283 352 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu6g01861 446 MobiDBLite consensus disorder prediction 352 366 - -
Vimu6g01861 446 SUPERFAMILY "Winged helix" DNA-binding domain 280 365 IPR036390 -
Vimu6g01861 446 Gene3D Glutaredoxin 52 139 - -
Vimu6g01861 446 PRINTS High mobility group protein (HMGY) signature 380 391 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu6g01861 446 PRINTS High mobility group protein (HMGY) signature 393 412 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu6g01861 446 PRINTS High mobility group protein (HMGY) signature 356 368 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vimu6g01861 446 Pfam Glutathione S-transferase, N-terminal domain 69 137 IPR004045 -
Vimu6g01861 446 CDD GST_N_family 70 131 - -
Vimu6g01861 446 SFLD Main (cytGST) 69 236 - -
Vimu6g01861 446 SUPERFAMILY GST C-terminal domain-like 142 260 IPR036282 -
Vimu6g01861 446 Gene3D - 280 352 IPR036388 -
Vimu6g01861 446 SMART AT_hook_2 432 444 IPR017956 GO:0003677
Vimu6g01861 446 SMART AT_hook_2 380 392 IPR017956 GO:0003677
Vimu6g01861 446 SMART AT_hook_2 404 416 IPR017956 GO:0003677
Vimu6g01861 446 SMART AT_hook_2 358 370 IPR017956 GO:0003677
Vimu6g01861 446 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 52 256 IPR044627 GO:0033355|GO:0045174|GO:0098869
Vimu6g01861 446 FunFam HMG-Y-related protein A 279 361 - -
Vimu6g01861 446 SFLD Glutathione Transferase (cytosolic) 69 236 IPR040079 -
Vimu6g01861 446 Gene3D - 140 259 - -
Vimu6g01861 446 FunFam Glutathione S-transferase DHAR3, chloroplastic 140 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01861 Vimu-Chr6 16800386 16809425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01861 40 257 Glutathione S-transferase Gene Family AT5G16710 71.560 1.70e-116 340
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01861 6 16800386 16809425 Vimu6g01861 6 16800386 16809425 ECH
Vimu6g01861 6 16800386 16809425 Vimu1g01108 1 8370529 8371938 PCT
Vimu1g01104 1 8303316 8304191 Vimu6g01861 6 16800386 16809425 PCT