Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01860 ACCACCACTGCCACCACCACCACCACCACCACCACCACCACCACCACTACTAACACCAAAACCGTCGAAGAAATCGAAACCACCAGCAACAAGCGCCTCAAGGCTTCCCCAATTGAATCCTCAGAGTCCGCTTCGGAGCCCACGCGCCCTGTAGTCCTCGTTGACTCTCAGGAAGCCGGCGTTCGTCTGGTGCACACTCTCATGGCTTGCGCGGAGGCCGTCCAGCAGGAAAATCTTAAGCTGGCGGACGCACTGGTGAAGCACGTTGGCATACTGGCTTCGTCTCAAGCCGGCGCCATGAGGAAAGTGGCTTCGTACTTCGCCCAGGCCCTGGCGCGTCGAATCTACGGCATCTTCCCTGAGGAAACCCTCGATTCCTCCTTCTCCGACCTTCTCCACATGCACTTCTACGAGTCCTGCCCCTATTTGAAGTTTGCACACTTCACCGCCAACCAGGCCATTCTCGAGGCCTTCACCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAACAGGGGATGCAGTGGCCCGCCCTCATGCAGGCCCTCGCATTGCGCCCTGGCGGTCCCCCAACTTTCCGCCTAACCGGAATCGGGCCCCCGCAGCCCGACAACACTGACGCGCTGCAGCAAGTGGGCTGGAAGTTGGCCCAGTTAGCCCACACCATCGGCGTCCAGTTCGAATTCCGCGGATTCGTCTGCAGCAGCCTTGCAGATCTCGACCCGAACATGCTAGAGATCCGTGCCGGAGAAGCCGTCGCAGTCAACTCCGTCTTCGAGCTCCATCGCATGCTGGCCCGACCCGGATCCGTCGACAAGGTCATGGACACAGTGAAAAAGCTCAACCCCAAAATCGTAACCATCGTGGAGCAAGAAGCGAACCACAACGGACCGGTTTTCTTGGACCGGTTCACTGAAGCCTTGCATTACTACTCGAGTCTCTTTGACTCGCTGGAGGGTTCTTCCACCTCCAACGGGTTGGGTTCGCCGAATCAGGATCTGTTGATGTCGGAGTTGTACCTTGGGAAACAGATATGCAACGTGGTGGCCTACGAAGGCGTGGAGCGCGTGGAGCGTCACGAGACTCTGAGCCAGTGGAGAGGAAGAATGGGCTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCTAACGCGTTTAAGCAAGCTAGTATGTTGCTGGCTCTATTCGCAGGCGGTGATGGGTACAGAGTGGAGGAGAATAACGGCTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATCGCCACCTCCGCTTGGAAGCTTCCCGCGACCGAGTCGTAG 1302 0.586 TTTATTTTTTTTTTTTTNTKTVEEIETTSNKRLKASPIESSESASEPTRPVVLVDSQEAGVRLVHTLMACAEAVQQENLKLADALVKHVGILASSQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDLLHMHFYESCPYLKFAHFTANQAILEAFTTAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAHTIGVQFEFRGFVCSSLADLDPNMLEIRAGEAVAVNSVFELHRMLARPGSVDKVMDTVKKLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSTSNGLGSPNQDLLMSELYLGKQICNVVAYEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPATES 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01860 433 Pfam GRAS domain family 63 427 IPR005202 -
Vimu6g01860 433 MobiDBLite consensus disorder prediction 31 47 - -
Vimu6g01860 433 MobiDBLite consensus disorder prediction 1 49 - -
Vimu6g01860 433 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 423 IPR005202 -
Vimu6g01860 433 ProSiteProfiles GRAS family profile. 54 427 IPR005202 -
Vimu6g01860 433 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01860 Vimu-Chr6 16784045 16785728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01860 26 428 GRAS Transcription Factor Family AT3G03450 70.660 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g01860 GRAS 1.8e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01860 6 16784045 16785728 Vimu6g01860 6 16784045 16785728 ECH
Vimu6g01860 6 16784045 16785728 Vimu5g02101 5 32689134 32691371 ECH
Vimu6g01860 6 16784045 16785728 Vimu1g01103 1 8289571 8291238 PCT