Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01856 ATGGAGAACTTGCTGGGTCTGCTGAGAATTCATGTTGAAAGAGGTGTCAATCTTGCAATCAGGGATGTGGTGAGCAGTGATCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAAACTCGGGTGGTAAAAAAAAATTTAAATCCTGAATGGAATGATGACTTGACCCTGTCTATTTCAGATCCTCATGCTCCAGTCCATCTGCATGTGTATGACAAGGACACATTCAGCTTAGATGATAAAATGGGGGATGCTGATTTTACCATTGGTCCATTTATTGAAGCAGTGAAGATGCGCTTGTCAGGTCTCCCCAACAATACCATAGTTACAAAAGTGTTGCCTAGCAGACAAAACTGCTTAGCTGAAGAGAGTCACATTGTGTGGAAAGATGGCAAAGTTGTGCAAAACCTGGTTCTTAGACTAAGAAATGTAGAGTGTGGGGAGGTGGAACTCCAGTTGAATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 498 0.4257 MENLLGLLRIHVERGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVKKNLNPEWNDDLTLSISDPHAPVHLHVYDKDTFSLDDKMGDADFTIGPFIEAVKMRLSGLPNNTIVTKVLPSRQNCLAEESHIVWKDGKVVQNLVLRLRNVECGEVELQLNWIDIPGSRHL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01856 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vimu6g01856 165 SMART C2_3c 7 102 IPR000008 -
Vimu6g01856 165 CDD C2_ArfGAP 5 148 - -
Vimu6g01856 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Vimu6g01856 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Vimu6g01856 165 Gene3D C2 domain 3 164 IPR035892 -
Vimu6g01856 165 Pfam C2 domain 6 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01856 Vimu-Chr6 16746894 16748803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01856 38 165 C2H2 Transcription Factor Family AT1G70790 56.154 2.80e-49 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01856 6 16746894 16748803 Vimu8g01637 8 22217366 22219490 ECH
Vimu6g01856 6 16746894 16748803 Vimu6g01856 6 16746894 16748803 ECH
Vimu11g02633 11 46729726 46731103 Vimu6g01856 6 16746894 16748803 ECH
Vimu7g04199 7 40664345 40669835 Vimu6g01856 6 16746894 16748803 ECH