Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01249 ATGCAGCCTAATCAGCCAGCAGGAATTGCCACCCAGAATCCGCATATTCCGCCACCTTTGCAGCCGCCACCTTCATCGGTGACGGCTGCTATCGGAGGTGGTGGTGGCGGCGGGGGCGGTGGCTACCAGGGCTCAATTAGACCGGGATCAATGGCTGATAGAGCTAGAATGGCAAAGATACACCAACCTGATGCAGCACTGAAATGTCCGCGATGTGAATCTGCCAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCCCGCCACTTCTGCAAGACTTGCCGTCGCTACTGGACCAGAGGAGGTGCACTGAGAAACGTGCCGGTTGGAGGTGGTTGCAGAAGGAACAAAAGAAGCAAAGGAAGCGGCGGTAGATCGAAGTCTCCCATGAAACCCTCAACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCGACACAAACTCAATTTCCATTCTTGACCTCCTTGCATCATTACAACAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGACGATCACAACAACACCTTTGGTGGGTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCACTTGGTAACAGTGGTGGAGCTATGTTGTCAAATGGCCTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCAGCAGTTCCCTTTTTTGAGCACTAATCTAGAGCCGCAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGCTGAACCGCCAAGTTATGCAAAGGAAGGTGGCCGGTTTAACATTCGCTCTAAAATAGATTCTATTTCTAGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAAGAAAATCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACATGTTGTGA 1047 0.4776 MQPNQPAGIATQNPHIPPPLQPPPSSVTAAIGGGGGGGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHLPTPTQTQFPFLTSLHHYNSDYVSGGIGSHFGTITTTPLVGRNSSDVEFQIGTGSASSLGNSGGAMLSNGLGEQWRLNNLQQVQQQFPFLSTNLEPQIGLFQFGGGENNNAEPPSYAKEGGRFNIRSKIDSISSLSGLMPQVNTIKMEENQGLNLPKNLLMGNDALWNGSGNAWSEVPCFTPSNNHML 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01249 348 MobiDBLite consensus disorder prediction 129 156 - -
Vimu6g01249 348 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Vimu6g01249 348 MobiDBLite consensus disorder prediction 1 49 - -
Vimu6g01249 348 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Vimu6g01249 348 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Vimu6g01249 348 MobiDBLite consensus disorder prediction 111 156 - -
Vimu6g01249 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 229 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01249 Vimu-Chr6 12519672 12520997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01249 46 123 C2C2-Dof Transcription Factor Family AT2G37590 83.333 2.24e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu6g01249 zf-Dof 8.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01249 - - vun:114185583 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01249 6 12519672 12520997 Vimu6g01249 6 12519672 12520997 ECH