Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01141 ATGTTCCCTTCTTCTAATTACACCTCCTCGGGCTCTTACCCTCGTTTCCCTTCTTCATCTTCTTCTGCTTCGCCCTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCTGCCAGCACCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCTACTAATTATCATGCTCCGATTCCTGAAACACTGGCCAATTGGGCAGTTGCAGATTGTGCCGCTGCGGCAATGCTCAATCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAGAAACCTGCGAAGAAAACGGCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGCTTGAGGGACCGGAGGGTGAGGCTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCGATTAAGGAGCTAACTCGAAGCAAGCACAGTGCTGATAGCTTCGAATTCTCCTCGTCTTCGGATGGTGAAGTGGTTTCTGTGATCCACCAAGACCAACAACAGCAACAAGGGATGGACTTTGAAGAGGGGAAGTTGAAAGAACCTGCCTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGAGAAAGGACTAGTTGCAAGATACTGTGCAGTGGTGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCATCAAATCCTGAACCAATTAAGGTCACCCCTTCAACTTCATCCTCAAGATGTAGATGGAGGAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAACTGTGAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATGCTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTATCTGCAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1101 0.4641 MFPSSNYTSSGSYPRFPSSSSSASPYPSFTFLHPENSSASTTFLHDPLSVTFIPTNYHAPIPETLANWAVADCAAAAMLNQDLGGALYGITKKPAKKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEFSSSSDGEVVSVIHQDQQQQQGMDFEEGKLKEPAYCVKAKMKESREKARARARERTSCKILCSGEGKVQELKKKCPATENHQILNQLRSPLQLHPQDVDGGVPRDDDFNVIEESIVIKRKLKHSLMSSIHHQNAVIPKEATVNNSDYHSFPNLSPNWEANNAANGRSTFCAIASMNLSAGLQIFGKSWEECTNPHPT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01141 366 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Vimu6g01141 366 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Vimu6g01141 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 92 330 IPR005333 GO:0003700
Vimu6g01141 366 Pfam TCP family transcription factor 98 228 IPR017887 -
Vimu6g01141 366 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01141 Vimu-Chr6 11780787 11781993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01141 54 249 TCP Transcription Factor Family AT1G67260 39.000 6.46e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu6g01141 TCP 3.5e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01141 6 11780787 11781993 Vimu7g00945 7 9170572 9172025 ECH
Vimu6g01141 6 11780787 11781993 Vimu6g01141 6 11780787 11781993 ECH
Vimu10g00834 10 7430417 7432008 Vimu6g01141 6 11780787 11781993 ECH