Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01051 GGAGTGAGGTTGGAGAATAATAAGGATATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACCTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAACTTTATGAGTTCTGCAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGTAGTTATGGAGCGGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGAACCCAAAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGATCAGTTGGCTGATCTTCAAAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATTCTCAGTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACCTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTCGCTTCAGATCAGATAACTGCAACAACTCCAGCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 774 0.4483 GVRLENNKDMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQNSQSQGFFQPLECNPTLQIGPDYRYNVVASDQITATTPAQQVSGFIPGWML 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01051 257 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 Coils Coil 133 153 - -
Vimu6g01051 257 Pfam K-box region 94 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu6g01051 257 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 CDD MADS_MEF2_like 11 85 IPR033896 GO:0000977|GO:0045944
Vimu6g01051 257 SUPERFAMILY SRF-like 11 85 IPR036879 GO:0003677|GO:0046983
Vimu6g01051 257 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 191 - -
Vimu6g01051 257 ProSiteProfiles K-box domain profile. 96 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu6g01051 257 Gene3D - 22 92 IPR036879 GO:0003677|GO:0046983
Vimu6g01051 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Vimu6g01051 257 FunFam MADS-box transcription factor 1 22 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01051 Vimu-Chr6 11195519 11201634 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu6g01051 K-box 7.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01051 6 11195519 11201634 Vimu6g01051 6 11195519 11201634 ECH
Vimu6g01051 6 11195519 11201634 Vimu7g00880 7 8625372 8630412 ECH
Vimu6g01051 6 11195519 11201634 Vimu10g00797 10 7038703 7045735 ECH
Vimu8g00709 8 13925600 13930107 Vimu6g01051 6 11195519 11201634 PCT