Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00988 ATGGCCTTGCAAACAGCTACTCCTCCAACTGCTCCCAGTGCCCAAGTTGTGGGTAATGCATTTGTTGAACAATATTACCACATTCTTCACCATTCACCAGATTTGGTCTATCGGTTTTACCAGGACTCTAGTGTGATTAGCCGTCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAAATAAAGACTGCAGATGCTCAAAACTCATACAAGGAGGGAGTGACTGTACTGGTGACTGGATGCTTGACTGGCAAGGATAACATGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCGCAAGACAATGGCTATTTTGTTCTTAATGATGTTTTTAGGTATGTAGAAGATGATGAACCATCTGAACTACCTCCAGTTAATGGAGATGATGATGCAGCTGCTGTTAAAATAACCCCAGAACCAGGCAAGATTATAATTAAAAAAATTGTATTTTCTAGTAGACTTTATTCTATAGTTGTATTCATGCTTTCTTATTTCTTTACAGAATCCATTTATGTTGCTGATTCTCCTGCCCCAGACCCCACAAATTCTCTTGTGAACAAAGGTCAAATTGTTGCAGAGAAGGCTTATGCTCCACCCAATCACCACGAGAGACAGATACCTGCTGAAAATGAAGGCAATGTAGAATCCCATTTTCAGTCAAATGGCAATGATGATTCTCAGGCCACAGAAGTGGCTTCTTTAGCTCAGGAGGATGCTCCAAAGCAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGGACCAACTAAAGTTTATGTGCCTACTAATAAGCTAAAGTCAGGGCCTAACAAAACTGAGAACCTGGTAGTTCAGTCAGTAGAATCCGATGAAGTGCCTGAAGCAACTTTGGATATTGTTAACGACCCTGAAAGTAGTGATGCTCATGAAGAAGTTGAAGGGCACTCCATTTACATTCGAAATTTACCTTTAAATGTGACGGTTGGTCAGTTGGAAGCAGAGTTTAAGAAATTTGGCCCCATCAAGCCGGAAGGCATCCAAGTCAGAAATAACAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTGTAAATTCGATGGATAGTGCAATTCAGGCTTCACCTATTCCTATTGGGGGGCGTCAAGCTGTAGTTGAGATAAAGAGAACCACTACTCGAGTTGGCAGTGGCATTAGCAATACTGGAAGACCTAGGATCCCACCCGGTAGGGGTGGTTTAAGAAATGACTCTTTCAGGGGCCGTGGGAACTACGGTGGAGGAGGTCGAGGATACGGTCGAAATGATTATGGAAGCCGCGGTGGTGAGTTTTCTGGTAGAGGTCGTGGTCATGGTGAAGGGTATCACCAAGGGAGAGGGAGAGGTGGGCGGTCAAGCGGACCAAAACAGAATGCTGTTTTGAACTGA 1476 0.4282 MALQTATPPTAPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQNSYKEGVTVLVTGCLTGKDNMRRKFAQSFFLAPQDNGYFVLNDVFRYVEDDEPSELPPVNGDDDAAAVKITPEPGKIIIKKIVFSSRLYSIVVFMLSYFFTESIYVADSPAPDPTNSLVNKGQIVAEKAYAPPNHHERQIPAENEGNVESHFQSNGNDDSQATEVASLAQEDAPKQSYASIVKVQKGSSGPTKVYVPTNKLKSGPNKTENLVVQSVESDEVPEATLDIVNDPESSDAHEEVEGHSIYIRNLPLNVTVGQLEAEFKKFGPIKPEGIQVRNNKQQGYCFGFVEFLSVNSMDSAIQASPIPIGGRQAVVEIKRTTTRVGSGISNTGRPRIPPGRGGLRNDSFRGRGNYGGGGRGYGRNDYGSRGGEFSGRGRGHGEGYHQGRGRGGRSSGPKQNAVLN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00988 491 Gene3D - 315 415 IPR012677 -
Vimu6g00988 491 MobiDBLite consensus disorder prediction 411 491 - -
Vimu6g00988 491 MobiDBLite consensus disorder prediction 234 253 - -
Vimu6g00988 491 FunFam Ras GTPase-activating protein-binding protein 1 318 451 - -
Vimu6g00988 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 407 IPR000504 GO:0003723
Vimu6g00988 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 390 IPR000504 GO:0003723
Vimu6g00988 491 SMART rrm1_1 331 403 IPR000504 GO:0003723
Vimu6g00988 491 MobiDBLite consensus disorder prediction 234 258 - -
Vimu6g00988 491 FunFam Nuclear transport factor 2 family protein 8 138 - -
Vimu6g00988 491 SUPERFAMILY RNA-binding domain, RBD 324 448 IPR035979 GO:0003676
Vimu6g00988 491 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Vimu6g00988 491 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Vimu6g00988 491 Gene3D - 6 138 - -
Vimu6g00988 491 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 466 IPR039539 -
Vimu6g00988 491 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Vimu6g00988 491 CDD RRM_SF 332 403 - -
Vimu6g00988 491 CDD NTF2 13 135 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00988 Vimu-Chr6 10653596 10658785 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00988 6 10653596 10658785 Vimu6g00988 6 10653596 10658785 ECH