Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02389 ATGAAGATCCAGTGTGATGTCTGTCACAAAGAAGTCGCCTCCTTCTTCTGCCCTTCAGACGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCTCACAAACACAAACGCCTCTCTCTCATCCACCCCACCTCCATACCCGCCACTCTCTGTGATATCTGTCATGAGAAGCGTGCTTACGTCTTCTGCAGAGAAGACAGAGCTCTTCTTTGCAGACAATGTGATGTTTCCATCCATGATGTCAACGAACATACCAAGACGCACGACAGGTTTCTTCTCACTGGAATAACGCTTGAAGAAAAAACCAGAACAACCTCAACCTCGTCAACCTCAAACGCCGCACAAAGTTCACTCTCGAACGAAAACATCGATTCTTTTGGTTCTTCTCATAATAACTCGAGTTCGGTTTCAACAAGTAGCTTATCTGAGTATTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTCTTAGATGCTTCGTTTCCTGCATCAAATGCTTTCTCTAAGGATTATGAGTTTCAGAACGACGATGTTCAAGTTGGCATGTGCTCGATCCCACTGCAAACTCAATTTAGCACAGCTTCGAATCTTCATCCTGAAATGCCAAAAGCTAAAGCTGGTGAAGGATACTCAGATTGGATTCATGATTCTGATTACGCAGCCTACAAAGTTCCCTCGATTGCTCCTCCTTTAGTAAAAAAACTTAAACGCTCTCGTTGA 744 0.4503 MKIQCDVCHKEVASFFCPSDEAALCHACDRTIHHANKLAHKHKRLSLIHPTSIPATLCDICHEKRAYVFCREDRALLCRQCDVSIHDVNEHTKTHDRFLLTGITLEEKTRTTSTSSTSNAAQSSLSNENIDSFGSSHNNSSSVSTSSLSEYLIQTIPGYCMEDLLDASFPASNAFSKDYEFQNDDVQVGMCSIPLQTQFSTASNLHPEMPKAKAGEGYSDWIHDSDYAAYKVPSIAPPLVKKLKRSR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02389 247 CDD Bbox1_BBX-like 5 47 - -
Vimu5g02389 247 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vimu5g02389 247 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu5g02389 247 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vimu5g02389 247 MobiDBLite consensus disorder prediction 110 143 - -
Vimu5g02389 247 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270
Vimu5g02389 247 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Vimu5g02389 247 CDD Bbox1_BBX-like 57 100 - -
Vimu5g02389 247 Gene3D Classic Zinc Finger 1 99 - -
Vimu5g02389 247 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu5g02389 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02389 Vimu-Chr5 34597911 34598856 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu5g02389 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02389 5 34597911 34598856 Vimu5g02389 5 34597911 34598856 ECH
Vimu5g02389 5 34597911 34598856 Vimu5g02425 5 34905887 34907953 ECH
Vimu5g02389 5 34597911 34598856 Vimu7g03030 7 25543693 25545553 ECH