Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02379 ATGAATCGGAATCTTATCTTCGCTGGTCTGTTCTCCGTCGTTGTTCTTGTGGCGGCTGCCTCTTCGGATGTCGGCGAGGACAATCTGATCCGCCAGGTGGTAGGCGGCGTCCGGCTCGGAGCAGAAGAGCACTTTTTGGAGTTCAAGCGTAGGTTCGGAAAGGCGTACGCTACCGGGGAAGAGCACGATTACAGGTTCACTGTGTTCAAGGCTAACTTGCGCCGTGCTCGGCGCCACCAGAGCCTGGACCCTTCCGCGGTTCACGGCGTGACTCAGTTCTCTGACCTTACGCCGACGGAGTTCCGAAATAAGGTTTTGGGCCTGCGAGGTGTGAGGTTGCCCTCCGATGCGAAAAAAGCTCCCATTCTCCCCACGGATGATCTTCCGAGTGATTTTGATTGGAGAGATAACGGTGCAGTTACCGCTGTCAAGAATCAGGGTTCATGCGGTTCGTGTTGGAGCTTCAGCGCTACTGGGGCTCTGGAAGGGGCTCACTTTCTGGCAACAGGGGAACTTGTGAGTCTTAGTGAGCAGCAGCTTGTTGATTGTGATCACGAGTGTGATCCGGATGAAGCAGGTTCTTGCGACTCTGGGTGCAATGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTAAAATCTGGTGGGGTGATGCGCGAGGAAGACTATCCTTATTCTGGTAGTGATCGAGGTACCTGTAAATTTGACAAAGCAAAGATTGCAGCATCCGTGGCAAACTTCAGTGTGGTCTCACTTGATGAAGACCAAATTGCTGCAAATCTTGTGAAAAATGGTCCTCTTGCAGTTGCCATCAATGCAGTATTCATGCAGACATATATGCATGGAGTATCATGCCCATACATATGCTCAAAAAGGCTGGATCATGGAGTATTACTGGTGGGATATGGTTCTGGTGCCTATGCACCCATTCGGATGAAGGAGAAGCCATATTGGATCATCAAAAACTCATGGGGAGAGAATTGGGGAGAAAATGGATACTACAAGATTTGTAGAGGCCGAAATATCTGTGGAGTAGATTCCATGGTTTCAACTGTGGCCGCAGTGCATACAACTACTCACTAG 1083 0.4995 MNRNLIFAGLFSVVVLVAAASSDVGEDNLIRQVVGGVRLGAEEHFLEFKRRFGKAYATGEEHDYRFTVFKANLRRARRHQSLDPSAVHGVTQFSDLTPTEFRNKVLGLRGVRLPSDAKKAPILPTDDLPSDFDWRDNGAVTAVKNQGSCGSCWSFSATGALEGAHFLATGELVSLSEQQLVDCDHECDPDEAGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGSDRGTCKFDKAKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYMHGVSCPYICSKRLDHGVLLVGYGSGAYAPIRMKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTTH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02379 360 Pfam Cathepsin propeptide inhibitor domain (I29) 45 101 IPR013201 -
Vimu5g02379 360 SUPERFAMILY Cysteine proteinases 43 352 IPR038765 -
Vimu5g02379 360 CDD Peptidase_C1A 129 352 IPR039417 -
Vimu5g02379 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 293 303 IPR025660 -
Vimu5g02379 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 317 336 IPR025661 -
Vimu5g02379 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Vimu5g02379 360 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Vimu5g02379 360 PRINTS Papain cysteine protease (C1) family signature 295 305 IPR000668 GO:0006508|GO:0008234
Vimu5g02379 360 PRINTS Papain cysteine protease (C1) family signature 317 323 IPR000668 GO:0006508|GO:0008234
Vimu5g02379 360 SMART Inhibitor_I29_2 45 101 IPR013201 -
Vimu5g02379 360 SMART pept_c1 128 353 IPR000668 GO:0006508|GO:0008234
Vimu5g02379 360 Pfam Papain family cysteine protease 128 351 IPR000668 GO:0006508|GO:0008234
Vimu5g02379 360 Gene3D Cysteine proteinases 24 353 - -
Vimu5g02379 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 43 346 IPR013128 GO:0008234
Vimu5g02379 360 FunFam Cysteine protease RD19A 28 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02379 Vimu-Chr5 34524383 34526456 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02379 5 34524383 34526456 Vimu5g02379 5 34524383 34526456 ECH
Vimu1g02960 1 41992007 41994038 Vimu5g02379 5 34524383 34526456 ECH