Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02161 ATGGCTGACAAAGATGGCGTTTATGCAGCAGAAACTGAGAGGAGGGCTCCAATTTTCAGCTTCTTTAAAGATGCTAGACTAGTTTTCAAATTTGACAACCTTGGTTGTGAAATATTATCAATTGCATTGCCTTCAGCAATGGCTTTTATAGCTGATCCTATTGCTTCACTGGTTGACACAGCATTTATTGGTCAAATAGGTCCAGTGGAGCTTGCAGCTGTAGGGGTGGCCATAGCACTCTTCAATCAAATATCAAGAATTGCAATATTTCCACTTGTCAGTGTCACTACCTCTTTTGTGGCAGAGGAAGATTCCCTTTCTGGAGCCAGTCCTCAAGTAGAGAAGAATGAAAGGTCGGAGGCAGGTCCAATTATAGATGCTGAAATAAAAGAACTAGTACCACTTAACAAAGATTTGACTGCTATTGACTGTAATATAGTTGAGTTTGAACATAAGAGAAGGCGTATCCCTTCTGCTTCATCAGCCTTACTAATCGGTGGCATTCTTGGAATCATCCAAACAATGTTCCTCATAGTTGCTGCAAAACCTTTATTGAACTTCATGGGAGCAACCTCAGACTCTCCTATGCTAAACCATGCACATAAATACCTGATATTGAGGTCCCTCGGTGCTCCTGCAGTTCTTCTCTCGTTAGCAATGCAGGGAATCTTCCGAGGATTTAAAGACACTAAAACGCCTTTATATGCCACATTGGCAGGAGATATAACCAATGTAGCACTTGATCCTTTATTCATATTTGTTTTCCGCTTGGGGGTCAGTGGTGCAGCTATTGCTCATGTTATATCTCAGTACCTAATTTCACTTATACTCCTGTGGAGCTTGATACAGAAAGTTGATCTTATACCACCAAGCATCAAGCATTTACAATTTCATCGATTTCTTAAAAATGGCTTCCTATTATTCGTAAGAGTAATTGCTGTAACATTCTGTGTGACACTGGCAGCATCATTAGCTGCACGCAAGGGACCAACATCCATGGCTGCATTTCAAGTCTGCTTGCAGATTTGGTTAGCAGTGTCCCTTCTTGCTGATGGTCTCGCTGTTGCTGGACAGGCAATTCTTGCAGGTGCATTTGCAAACAAGGACTACGAGAAGGCCGAAGCAACTGCATATCGAGTATTGCAGCTGGGGTTGGTTCTGGGATTGGCTCTTGCATTCATTCTCGGAACAGGACTGCATTTTGGAGCTAAACTATTTACCAAAGATGTTGATGTCATTCACCTCATCAGAATTGGGATCCCGGTAACTAATGCTCAAATCACTACCTCATTTTTTCAACTCCAATGGAACTCAGTTGATAATGATTATCCTGATCAGTTTGTAGCAGCCACTCAACCCCTCAACGCTTTGGCCTTTGTATTTGATGGAATCAACTTCGGGGCATCTGATTTTGCATATTCAGCCATTTCTTTGGTTGTGGTGGCAATTTTCAGCATAATTTGTCTACTTCTTTTATCATCTGTTGGTGGTTTCATAGGAATTTGGATTGCTTTGACCATCTATATGGCTCTTAGAGCAATTGTGGGCCTTCTGAGGATTGGAACTGGATCAGGACCCTGGAAGATGATTAGGAGCTAA 1599 0.419 MADKDGVYAAETERRAPIFSFFKDARLVFKFDNLGCEILSIALPSAMAFIADPIASLVDTAFIGQIGPVELAAVGVAIALFNQISRIAIFPLVSVTTSFVAEEDSLSGASPQVEKNERSEAGPIIDAEIKELVPLNKDLTAIDCNIVEFEHKRRRIPSASSALLIGGILGIIQTMFLIVAAKPLLNFMGATSDSPMLNHAHKYLILRSLGAPAVLLSLAMQGIFRGFKDTKTPLYATLAGDITNVALDPLFIFVFRLGVSGAAIAHVISQYLISLILLWSLIQKVDLIPPSIKHLQFHRFLKNGFLLFVRVIAVTFCVTLAASLAARKGPTSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFANKDYEKAEATAYRVLQLGLVLGLALAFILGTGLHFGAKLFTKDVDVIHLIRIGIPVTNAQITTSFFQLQWNSVDNDYPDQFVAATQPLNALAFVFDGINFGASDFAYSAISLVVVAIFSIICLLLLSSVGGFIGIWIALTIYMALRAIVGLLRIGTGSGPWKMIRS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02161 532 NCBIfam MATE family efflux transporter 44 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g02161 532 CDD MATE_DinF_like 37 522 IPR044644 -
Vimu5g02161 532 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 10 531 IPR044644 -
Vimu5g02161 532 Pfam MatE 159 250 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g02161 532 Pfam MatE 308 433 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02161 Vimu-Chr5 33028843 33032758 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00471 4 3399378 3404250 Vimu5g02161 5 33028843 33032758 PCT