Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02101 ATGGATCCACGTTTCGAGTTCAATTTCATCAACGGTTTTAAACCTAACCAAGTGCCCAACACGGTTGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTTGAGTTTGGATTCAGGGATGACTCGTTAATTCTTCCACCTGATCCAAACGTTGCTCAGAACCGTGTTTCCTTTGCCACCGACGAGGAGTCTCCACTGGACGAGATTGATTTTTCTGCTACTGTCTTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCTTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGCCATTGGTGAGACACACCCTTCTTCAATAAAAACCTATCACAACGTAGACAGCCCTGAGGACAGTGGTTTCAGTGATTATGGCAGCAGTGGTACAGCCACTAGCAATGGTAACTCGATTGAGTCCCATTGGGGTAACGTTGATCTTACTGACTATAAGCCTTCCATACTGCAAACCACTTTTCCCACTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCTATGAACACCACAAGCAACTTCAGTGTTACCGATAGTGGATTCTTGCATAGTTCCACTTCGGCTGGATGTTTGGATCCAACCTTGTTTAGCAAGAGTGAATCTGTTCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTCCTACCTAAAGTGAATCCTTTGGTTGTTGACTTGGAGAACCCCTTTTTGAGGAAGGTTCCACCTATCCAAGAGGAAATTAAGGCAGAGAGAGATGAAATTTTTGCTGAGTTAAGAGGAAGGAAGAATCACGGGCGGGAAAATGAAGAAGCAGATTCGCAAGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTGGGCAATGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCAAGTGCACAGAAAAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGCAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTTTCTGCTAATGAATTGCTGAAGCAGATAAGGCAACATACTTCTCCGCTGGGTGAGGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGCTTGGCTGGGACAGGCACTCAGATTTATACCGCTTTATCCTACAAAAGAACCTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCTTGTCCATTCAAGAAGCTATCAATCATTTTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCACATTATAGACTTTGGCATCCGTTATGGCTTCCAGTGGCCAGCTCTTATTTATCGTCTATCAAAACGAGTTGGTGGGCCTCCCAAGCTGCGGATAACAGGGATAGAACTCCCACAACCCGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGACTTCGCCTTGCAAGATACTGTGATCGCTTTAAAGTTCCATTCAAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAGAGTTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTCTATGTTTAGATTTCAGAATCTACTTGATGAGACAGTTGTGTTGAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGGAAGGCAAATCCCACTATCTTTATACATGGTACTGTCAATGGGAGCTACAATGCTCCGTTCTTTGTAACAAGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACTAATGTGAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGGCCCGAGACATACAAGCAATGGCAGGTTAGGAACACGAGAGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATCAACAAATTAAGATCCAAGTTGAAAGATATTTACCACAGTGATTTCATGCTTCTTGAAGATGCCAACTTTATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTACCTGCATAG 2238 0.4397 MDPRFEFNFINGFKPNQVPNTVVVEDQFLVPVNGMMRPFEFGFRDDSLILPPDPNVAQNRVSFATDEESPLDEIDFSATVLRYINQMLMEEDLEAKSCMFHDSLALQAAEKSFYEAIGETHPSSIKTYHNVDSPEDSGFSDYGSSGTATSNGNSIESHWGNVDLTDYKPSILQTTFPTDFVFQASSIQSSMNTTSNFSVTDSGFLHSSTSAGCLDPTLFSKSESVLQFERGVEEANKFLPKVNPLVVDLENPFLRKVPPIQEEIKAERDEIFAELRGRKNHGRENEEADSQDGRSNKQSAVYIDDSEISELLDKVLLGNGCRKEPAPLCICYADLPNGASSSAQKKLEETNKSGGGKSRVKKQGNTKGVVDLRTLLILCAQAVSSDDRVSANELLKQIRQHTSPLGEGTQRLAHCFANALEARLAGTGTQIYTALSYKRTSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRVGGPPKLRITGIELPQPGFRPAERVQQTGLRLARYCDRFKVPFKFNAIAQKWETIRVEDLKIKENELLAVNSMFRFQNLLDETVVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNTRAGFRQLPLDKHLINKLRSKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02101 745 MobiDBLite consensus disorder prediction 275 299 - -
Vimu5g02101 745 MobiDBLite consensus disorder prediction 275 293 - -
Vimu5g02101 745 MobiDBLite consensus disorder prediction 343 364 - -
Vimu5g02101 745 ProSiteProfiles GRAS family profile. 363 743 IPR005202 -
Vimu5g02101 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 296 736 IPR005202 -
Vimu5g02101 745 Pfam GRAS domain family 372 742 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02101 Vimu-Chr5 32689134 32691371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02101 80 745 GRAS Transcription Factor Family AT1G07530 53.868 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02101 GRAS 6.1e-112 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02101 5 32689134 32691371 Vimu5g02101 5 32689134 32691371 ECH
Vimu6g01860 6 16784045 16785728 Vimu5g02101 5 32689134 32691371 ECH
Vimu4g00497 4 3611069 3613102 Vimu5g02101 5 32689134 32691371 PCT