Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01996 ATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGTCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTTACACCCAATCCAAACAACCCACTCACTGGTTTTCCTTCCTTGTCTTATGACTCGAGCGACCTCACTCTTGCACTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAATCCCACAAGCATGCACCACTCTTCCACAAACCCAGGCTTCTTGGATTCTCTTAGAAGTGGGTTCCTTGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATCACCACCATGAAACAAGAACTTTGCAATGCAAGGGAGCAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAGCTTGACTCAGGAAGGGCTAATTGGAATGCTCTCACCTCATCTTGGCATGGACTTCTCAATAGTCCTCTAATGTAG 813 0.4649 MSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRIQDQGFTPNPNNPLTGFPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSMHHSSTNPGFLDSLRSGFLGTQSNVQNLYYGYGNGDMGEVDNGNACGGGVSGEMMLPYDQEITTMKQELCNAREQSESRVLWGFPWQLNGDTNMAELDSGRANWNALTSSWHGLLNSPLM 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01996 270 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Vimu5g01996 270 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Vimu5g01996 270 MobiDBLite consensus disorder prediction 74 111 - -
Vimu5g01996 270 MobiDBLite consensus disorder prediction 80 111 - -
Vimu5g01996 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 169 IPR045174 GO:0003700|GO:0006355
Vimu5g01996 270 MobiDBLite consensus disorder prediction 1 30 - -
Vimu5g01996 270 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01996 Vimu-Chr5 31762473 31763345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01996 27 270 C2C2-Dof Transcription Factor Family AT2G28510 46.038 4.33e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu5g01996 zf-Dof 5.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01996 - - gmx:100799737 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00588 4 4349170 4350385 Vimu5g01996 5 31762473 31763345 PCT