Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01052 ATGATTGAAGATAGGACTTACAAGATGGAAGGAAATATATATGTTGACATAAGATGGAAACGACCACATGTTACGAAGGCACAAACACCGAGTTTTCTGGCAAGTAATTGCCAAAACACAACCCAACAACCCCTCAGCAGTGTATACCAAACAAATCTTGATCGCATGCTCAGATGGGCATCTTCAGACGCAGCCACAAGCAAAGGTTATAACTACAAAAGCATAGCCCCTCAGCGTTGCCCCAACAATAGGGTCTCTGCTATGGTTTGGTATGAATTCTGCATTCTGAGGTACTCAAATGAGAGCTTTTATGGGACTGTTTTAACAAACATATCATGGCATGTTCTTGGAGAGAAAAATATATCCAACATGGAAGATATTCATAAAGGTGATGATTTTGTGAGAGGTTTGATCAAAAAAGCAACAAAGGAAACTAACCAGTTGTTTTATATGGATGTCTTGAATTTGAGTTCCACAGAGAAAAGATATGGCTTGGTGCAATGTTCTAGAGATCTCACAAAGGAAGGGTGCAGACAGTGTTTGGAGACAATATTAGCCCAAGTGGCCAAATGTCGTGAACAGAAATTAGGATGGGTGATTTGGACTGGAAGTTGTGCGATTAAGTATGATGATCATATGTTCTACCAAACATCTTCAGTTGCGGAGCCTAATCCGAAATTAGTGTATATGGGTGGTGGTGTAGAACTAGAAAAGGCTTGGAGAATATGGTGTGAAGGAAATTGTTTGGAAATGATGGATCCAACACTGGAAAAATCCTTCATAGGAAGTGAAGTTGAGAGATGCATCCAGATTGGTTTGTTGTGTGTTCAAGAAGATGCTAAAGATAGATCAAGCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGGTCCTTCCAAAACCCAAGCACCCACCCTTTTTGATTGGAAGAATGACCTTAGAGGAATTCTCTACATCAAACAGTTCCAAGAATCTTTCCATTAATGATGTCACAACCTCTGTTACTATACCGAGATAA 1023 0.3998 MIEDRTYKMEGNIYVDIRWKRPHVTKAQTPSFLASNCQNTTQQPLSSVYQTNLDRMLRWASSDAATSKGYNYKSIAPQRCPNNRVSAMVWYEFCILRYSNESFYGTVLTNISWHVLGEKNISNMEDIHKGDDFVRGLIKKATKETNQLFYMDVLNLSSTEKRYGLVQCSRDLTKEGCRQCLETILAQVAKCREQKLGWVIWTGSCAIKYDDHMFYQTSSVAEPNPKLVYMGGGVELEKAWRIWCEGNCLEMMDPTLEKSFIGSEVERCIQIGLLCVQEDAKDRSSMSDVVVMLASEGMVLPKPKHPPFLIGRMTLEEFSTSNSSKNLSINDVTTSVTIPR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01052 340 Pfam Salt stress response/antifungal 147 211 IPR002902 -
Vimu5g01052 340 Gene3D Transferase(Phosphotransferase) domain 1 214 304 - -
Vimu5g01052 340 ProSiteProfiles Gnk2-homologous domain profile. 109 214 IPR002902 -
Vimu5g01052 340 Gene3D - 113 213 IPR038408 -
Vimu5g01052 340 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 77 225 - -
Vimu5g01052 340 Pfam Domain of unknown function (DUF3403) 295 340 IPR021820 GO:0004674
Vimu5g01052 340 Coils Coil 340 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01052 Vimu-Chr5 17034309 17037444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01052 239 340 Receptor kinase-like Gene Family AT4G23150 44.860 7.06e-20 89.0