Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01050 ATGGCTCCCGAGTATGCTATGGAAGGCTTGTTTTCAGGGAAATCTGATGTTTTCAGCTTCGGAGTTATCGTCCTAGAAATCATTTGTGGGAGAAAGAATAGCGGATTCTATCTCTCAGAGCAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAAATCCTTCGTAGGAAGTGAAATTGAGAGATGCATACAGATTGGTTTATTGTGTGTTCAAGAAGATGCTAAAGATAGATCAAGCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGGTCCTTCCAAAACCCAAGCACCCACCCTTTTTGATTGGAAGAATGACCTTAGAGGAATTCTCTACATCAAACAGTTCCAAGAATCTTTCCATTAATGATGTAACAACCTCTGTTACTATACCGAGATAA 411 0.4015 MAPEYAMEGLFSGKSDVFSFGVIVLEIICGRKNSGFYLSEQGKCLEMMDPTLEKSFVGSEIERCIQIGLLCVQEDAKDRSSMSDVVVMLASEGMVLPKPKHPPFLIGRMTLEEFSTSNSSKNLSINDVTTSVTIPR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01050 136 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 133 - -
Vimu5g01050 136 Gene3D Transferase(Phosphotransferase) domain 1 1 95 - -
Vimu5g01050 136 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01050 136 Pfam Domain of unknown function (DUF3403) 91 136 IPR021820 GO:0004674
Vimu5g01050 136 SUPERFAMILY Protein kinase-like (PK-like) 1 119 IPR011009 -
Vimu5g01050 136 Pfam Protein tyrosine and serine/threonine kinase 1 88 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01050 Vimu-Chr5 17010714 17011256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01050 1 136 Receptor kinase-like Gene Family AT4G23150 44.872 3.22e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g01050 PK_Tyr_Ser-Thr 1.4e-08 CL0016