Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01042 ATGGCTCCGGAGTATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGTTTTGGAGTACTTGTTCTAGAAATCATTTGTGGAAAATGTTTGGAATTGATGGATCCAGTGTTAGAAAATTCCTACATATCCAATGAAGTTGAGAAGTTCATACAGATTGGTTTGTTGTGTGTTCAAGAAGCAGCAACAACTAGACCAACCATGTCCACTGTCATGGTATTGTTGGCAACTGATGTGATGAACATTCCCAAACCCAACAAACCTGCATTCTCAGTTGGAAGAATGACCTCACTGGAAACTTCTGCTTCAAAAAGTTCCAAGAGTATTTCCATTAATGATGCATCAATCTCTAGTATTGCACCAAGTCCTGAAGCTGGACGGAGACGATCTTCACTGGGTGGTGAAAGGAGAAGAAGATCGAGGGAAAGGAAGATGGAAAACACGAGTCAGAGTCAGCCTAGGCCAAAGGTCAACCTAAGCCGGCTTGGGCCGAAAGTTGAACTGAGTCGGCACAAGCCAAAGGTCTACCAAAGTCAGATTAACCTGAATGACGAGCCAAGCCGAAGACAAAAGGTCGAGTCGAGTTGGTTTAGCCTGGAGGTTGAAGGTCGAGCCAAGTTGGTTTGTATTGAAATTCAAGATAAGTTGGCTCATGCTGAAAGTCAAGTCAAGTCAGCGAGAAGGGTCAAAACTATTGCTTCAAGGAATGCTAGAAAAGCTTCTAGTCTGAATAACTGGATAAGCGATGATGAAGCTCAAACAAGGTATCTTGGTTGTTTGAAGAGAAAAAGTCTGGTAACACACAAATTTCTAAAGTTGAAATTCTTCATAAACAAAGGATTTATGTTTCAAAGATGGCTCAAGCATCAGGGTTTGAAGGGATTTGTCGAAATGGCAAGTCCCTGGTATCCGGATTTGGTGAAAGTGTTCTACTGCAATTTGAAGATTAAGAATGGTACTTTTTGTTCTCGAGTGAAAGGTGTTGACATAAAACTTACAAATGAAGTTTGGAGTAGTATTGGTGGATTGAAGATTGGTGGAGAAAAATGTCATCTCGGGATTGAAGGACTCCATAAGTTCATTGAGTATCAAAATTGTTTAAGAAATCCAGAAGACAGTAAGGATTACTCCGGTTACAAAACTGGTGGCATGAAAAAGGATGAGATATTAGCCTCGTATATCATAGCTTACATACCCATGGCCAGGGGAGGCAACTATGCTCAAGCCACCACATAA 1242 0.409 MAPEYAMEGLFSMKSDVFSFGVLVLEIICGKCLELMDPVLENSYISNEVEKFIQIGLLCVQEAATTRPTMSTVMVLLATDVMNIPKPNKPAFSVGRMTSLETSASKSSKSISINDASISSIAPSPEAGRRRSSLGGERRRRSRERKMENTSQSQPRPKVNLSRLGPKVELSRHKPKVYQSQINLNDEPSRRQKVESSWFSLEVEGRAKLVCIEIQDKLAHAESQVKSARRVKTIASRNARKASSLNNWISDDEAQTRYLGCLKRKSLVTHKFLKLKFFINKGFMFQRWLKHQGLKGFVEMASPWYPDLVKVFYCNLKIKNGTFCSRVKGVDIKLTNEVWSSIGGLKIGGEKCHLGIEGLHKFIEYQNCLRNPEDSKDYSGYKTGGMKKDEILASYIIAYIPMARGGNYAQATT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01042 413 Gene3D Transferase(Phosphotransferase) domain 1 1 84 - -
Vimu5g01042 413 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 108 - -
Vimu5g01042 413 Pfam Protein tyrosine and serine/threonine kinase 1 31 IPR001245 GO:0004672|GO:0006468
Vimu5g01042 413 MobiDBLite consensus disorder prediction 131 151 - -
Vimu5g01042 413 MobiDBLite consensus disorder prediction 118 173 - -
Vimu5g01042 413 SUPERFAMILY Protein kinase-like (PK-like) 1 104 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01042 Vimu-Chr5 16922225 16926050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01042 1 123 Receptor kinase-like Gene Family AT4G23150 40.645 1.03e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vimu5g01042 PK_Tyr_Ser-Thr 3.8e-06 CL0016