Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01007 ATGGAGGGGGAGAATGTTGGAAAGCCATTGTTGGAGAGGAAGAAGTACTACGAGAACTGCCCTGGTTGCAGAGTGGATAAAGCCAAAGAGTTGAGTGAGGGACAGGGTGTACCCTTTACGAATCTGTTCATAATATGGATGGTGGTGCTGTGTGCTTCTATGCCTATATCGTCTCTCTTTTCATACCTTTATTTCATGGTAAGGGATTTTAATATTGCAAAAACAGAAGCTGATATCAGTTTTTATGCTGGTTATGTGGGTTGTGCTTTCATGTTTGGAAGATGTTTGACATCTGTAATGTGGGGAATTGTAGCTGATCGCTATGGTAGAAAGCCTGTTATAATGATAGGGATTATTGCAATTGTTATTTTCAACACACTGTTTGGCCTTAGTACGAATTTTTGGATGGCAGTCATCATGAGATTTCTTCTGGGATGCTTTAGTGGTCTGCTTGGACCAGTGACGGCTTATGCTACTGAACTTTTTCGAGAAGAACACCAAGCTCTAGGAGTCTCAAGTGTTACTGCATCTTGGGGCGCGGGTTTAGTCATTGGCCCAGCTTTGGGAGGTTATTTGGCTCAGCCTGTGGAGAAGTATCCACATATTTTTCCAAAGGGTTCCTTTTGGGATAAGTTTGCTTACTTCTTCCCAAACTTTATAATATCTGCATTTGCATTTATTGTAGCTGTTGGCTGTATTTGGATTCCGGAAACACTTCACAATCATAATTGTAGCAATGAATCCATGGACAATTTTGAAGCTTTAGAAATTGGAAGCAGAGTGGTTGGAAAAGAAAAGACAAATCAAAAGAAGGAAAAGCTTCTCTTGAACTGGCCCTTGATGTCATCTATCATCATCTTTTGTGTTTTCTCCCTTCATGATGGTGCTTATCATGAGGTTTTCTCGTTATGGACTGTGAGTCCTCAAAGACTGGGGGGTTTGAACTTTACAACCAATGATGTTGGTAATGTTCTTTCAATATCAGGTCTTGCAGTTATCGTTTACCAAATTACTCTGTATCCATTTGTGAGAAGAACTACTGGACCTATTGGAATTGCTCGCATATCAGGGATACTAACCATACCACTTTTGCAAAGCTATACCTTCATTGGGTCATTATCAGGCTTTGCACTACACATAGTGTTAAGTATTGCTTCAATTCTGAAGAATATTCTTGCTGTGACCATTACAACTTGTTTGTTCCTTTTACAAAACCGAGCAGTGGAACAACACCAAAGGGGTGCAGCTAATGGCATTTCTATAACAGGCTTGTCTCTTTTCAAAGCTATTGGCCCTGCTGCAGGTGGTGCATTATTAACTTGGTCACAAAAGCGAATGGATGCTTCATTCCTCCCAGGCACTCAGATGGTGTTCTTTGTCCTGAACACCGTTGTAGCAGTTGGAACATTACTGACTTTCAAACCTTTCCTTGTCGAAAAGAGGACAACCTAA 1452 0.4084 MEGENVGKPLLERKKYYENCPGCRVDKAKELSEGQGVPFTNLFIIWMVVLCASMPISSLFSYLYFMVRDFNIAKTEADISFYAGYVGCAFMFGRCLTSVMWGIVADRYGRKPVIMIGIIAIVIFNTLFGLSTNFWMAVIMRFLLGCFSGLLGPVTAYATELFREEHQALGVSSVTASWGAGLVIGPALGGYLAQPVEKYPHIFPKGSFWDKFAYFFPNFIISAFAFIVAVGCIWIPETLHNHNCSNESMDNFEALEIGSRVVGKEKTNQKKEKLLLNWPLMSSIIIFCVFSLHDGAYHEVFSLWTVSPQRLGGLNFTTNDVGNVLSISGLAVIVYQITLYPFVRRTTGPIGIARISGILTIPLLQSYTFIGSLSGFALHIVLSIASILKNILAVTITTCLFLLQNRAVEQHQRGAANGISITGLSLFKAIGPAAGGALLTWSQKRMDASFLPGTQMVFFVLNTVVAVGTLLTFKPFLVEKRTT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01007 483 Gene3D MFS general substrate transporter like domains 40 473 IPR036259 -
Vimu5g01007 483 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 36 473 - -
Vimu5g01007 483 PRINTS Tetracycline resistance protein signature 171 193 IPR001958 GO:0022857
Vimu5g01007 483 PRINTS Tetracycline resistance protein signature 114 138 IPR001958 GO:0022857
Vimu5g01007 483 PRINTS Tetracycline resistance protein signature 345 365 IPR001958 GO:0022857
Vimu5g01007 483 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 480 IPR020846 GO:0022857
Vimu5g01007 483 Pfam Major Facilitator Superfamily 45 404 IPR011701 GO:0022857|GO:0055085
Vimu5g01007 483 SUPERFAMILY MFS general substrate transporter 41 476 IPR036259 -
Vimu5g01007 483 CDD MFS_SLC46_TetA_like 45 474 - -
Vimu5g01007 483 FunFam Protein ZINC INDUCED FACILITATOR-LIKE 1 40 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01007 Vimu-Chr5 16128222 16134709 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01007 5 16128222 16134709 Vimu5g01007 5 16128222 16134709 ECH