Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01004 ATGGAAGAGGAGAATGTTGAACAGCCATTGTTGGAGAAGAAGAAGTACTACGAGAGCTGCCCAGGTTGTAAAGTGGACGAAGCGAAAGAGTTGAGTGAGGGACATTCTGTACTCTTCACAAAGCTTTTTATCGTGTGGATGCTCGTGCTCTGTGCTTCTTTGCCAATATCATCTCTCTTTCCATTCGTTTATTTCATGGTAAGGGATTTTAATATTGCAAAAACAGAAGCTGATATTAGTTTTTACGCTGGTTATGTGGGTTCTGTATACATGCTTGGCAGATGTTTGACATCTTTATTTTGGGGAACTATAGCTGATCGCATTGGTCGAAAACCTGTTATAATTATATCAATTATTTCAGTCGTCATTTTCAACACACTATTTGCCCTTAGCACAAGTTTTTGGATGGCTGTTATCGTGAGGTTTCTTCTGGGAAGTTTAAATTGTTTGATTGGACCAGTGAAGGCCTATACTACTGAACTTCTTCGAGAAGAACACCAAGCTCTTGGACTCGCAACAGTAAGTTCAGCTTGGGGCGTAGGTTTAGTTATTGGTCCAGCATTGGGAGGCTATTTGTCTCAGCCCGTAGAAAAGTACCCTCATATATTTCCAAAGGATTCCTTTTGGGATAAGTTCCCATACTTCTTACCCAGCTTTGTAATATCAGCACTTGCATTTGTAGTTGCTATTGGCTGCATCTGGATTCCAGAAACACTCCACAAGCACAACTGTAGGGATGAATCCATAGATGATGCAAAAGCTTTAGAAAATGGAAGCAGTGCTGGTGGCATTGAAAAGATCCAAAAGAACGAAAACCTCTTCCGTAATTGGCCACTAATGTCATCTATCATTCCATATTGCATTTTCTCACTTCTTGAAGTTGCTTATCTAGAGGTTTTCTCGTTATGGGCTGTTAGTCCTCAAAGGCTTGGGGGTTTAAACTTTACTACTGATGATGTCGGTCTTTCACTTATCATTTACCAAATTGGCATATATCCATATGTGGAAAAAGCTACTGGACCTATTTCTGTTGCCCGTGTCTCATCTATATTAACCATCCCTCTTTTGCAAAGTTACCCTTTCATAGCATTGTTGTCAGGCTTAGCACTATACATAGTGCTAAGTATTCTTTCAATCCTAAGGAATATTCTGTCTATCACCATTACCACCGGTCTGATCCTTCTACAAAACCGAGCAGTGGAACAACACCAAAGAGGTGCAGCTAATGGAATTGCTATGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTGCAGGTGGTTCAGTATTAACTTGGTCACAGAAGCGGATGAATGCTTCATTCCTCCCAGGGACACACATGATGTTCTTTGTCCTGAACATGGTTGAAGCAGTTGGATTACTAATGATGTTCAAACCATTCCTTGTTGGAAAAAAGAAAACACACACAGATCAGTTACACTGA 1446 0.4066 MEEENVEQPLLEKKKYYESCPGCKVDEAKELSEGHSVLFTKLFIVWMLVLCASLPISSLFPFVYFMVRDFNIAKTEADISFYAGYVGSVYMLGRCLTSLFWGTIADRIGRKPVIIISIISVVIFNTLFALSTSFWMAVIVRFLLGSLNCLIGPVKAYTTELLREEHQALGLATVSSAWGVGLVIGPALGGYLSQPVEKYPHIFPKDSFWDKFPYFLPSFVISALAFVVAIGCIWIPETLHKHNCRDESIDDAKALENGSSAGGIEKIQKNENLFRNWPLMSSIIPYCIFSLLEVAYLEVFSLWAVSPQRLGGLNFTTDDVGLSLIIYQIGIYPYVEKATGPISVARVSSILTIPLLQSYPFIALLSGLALYIVLSILSILRNILSITITTGLILLQNRAVEQHQRGAANGIAMTGMSLFNAIGPAAGGSVLTWSQKRMNASFLPGTHMMFFVLNMVEAVGLLMMFKPFLVGKKKTHTDQLH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01004 481 SUPERFAMILY MFS general substrate transporter 42 475 IPR036259 -
Vimu5g01004 481 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 37 465 - -
Vimu5g01004 481 Pfam Major Facilitator Superfamily 45 424 IPR011701 GO:0022857|GO:0055085
Vimu5g01004 481 CDD MFS_SLC46_TetA_like 45 466 - -
Vimu5g01004 481 Gene3D MFS general substrate transporter like domains 40 464 IPR036259 -
Vimu5g01004 481 PRINTS Tetracycline resistance protein signature 114 138 IPR001958 GO:0022857
Vimu5g01004 481 PRINTS Tetracycline resistance protein signature 171 193 IPR001958 GO:0022857
Vimu5g01004 481 FunFam Protein ZINC INDUCED FACILITATOR-LIKE 1 40 464 - -
Vimu5g01004 481 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 472 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01004 Vimu-Chr5 15961170 15967060 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01004 5 15961170 15967060 Vimu5g01004 5 15961170 15967060 ECH
Vimu4g02210 4 24272305 24278003 Vimu5g01004 5 15961170 15967060 PCT