Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01003 ATGGTAGAGGAGAAAGGTAAACAGCCATTGTTGGAGAGGAAGAAGTACTATGAGAACTGCCCCGGTTGCAAAGTCGATAAAGCCAAAGAGTTGAGTGAGGGACAGGGTGTGCCATTTACAAAGCTTTTTATCATGTGGATGGTGGCGTTGAGTGCTGCATTGCCAATATCATCTCTCTTTCCATTCCTCTATTTCATGGTAAGGGATTTTAATATAGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGTATTCATGCTTGGCCGATGTTTGACATCTTTTCTGTGGGGAATCATAGCAGATCGCTTTGGTCGAAAACCTGCTATACTTATAGGGGTTACTTCAGTTGTCGTTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTATTATCACGAGATTTCTTCTGGGAAGTTTCAATGGTTATCTAGGACCAGTGAGGGCCTATGCCGCAGAAATTTTTAGAGAAGAACATCAAGCTCTAGGACTGTCAACAGTAAGCGCAGCTTGGGGCATAGGTTTAATAATTGGTCCATCACTGGGAGGCTATTTGGCTCAGCCAGTAGAGAAGTATCCAAATATTTTTCCAAAGGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACCTCATAACATCAGCATTTGCATTTGTAGTAGCAATTGGCTGCATCTGGATTCCAGAAACACTTCACAACCACAATTCTAGCAATGAATTCACAGAGTATGCTGAAGCTTTAGAAAATGGAATTGATGGCACAGACAATGAAAAGATAACAAAAAAGAATGAAAACCTTTTCCTGAATTGGCCCTTAATGTCATCTGTCATTGCTTATTGTGTCTTCTCACTTCATGACATTGCTTATCAAGAGATTTTCTCCTTATGGGCAGTGAGTCCTCCAAGTCTGGGGGGTTTGAACTTTACAACTAATGATGTTGGTAACATTCTTTCAGTATCAGGTCTTGCACTTATAATTTACCAACTTGCCTTATACCCTTCTGTGCAAAGAGCAAGTGGAGCTATTGGTAGTACCCGCATTTCAGCTCTGTTAACCATACCTCTTTTGCAAAGCTACCCCTTCATTGCATTGTTCTCAGGCTTAGCACTATTCATAGGGTTGAGTATTGCTTCAAGTCTGAAGAGTATTCTGTCTATCACCATTGTGACTGGTTTGTTCGTTCAACAAAATCGAGTAGTGGAACAACACCAAAGAGGAGCTGCTAATGGCATTGCAATGACAGGCATGTCCCTATTCAAAGCTATTGGCCCTGCATCAGGTGGTGCAATGTGA 1317 0.4138 MVEEKGKQPLLERKKYYENCPGCKVDKAKELSEGQGVPFTKLFIMWMVALSAALPISSLFPFLYFMVRDFNIAKTEADISSYAGYVGSVFMLGRCLTSFLWGIIADRFGRKPAILIGVTSVVVFNTLFGLSTSFWMAIITRFLLGSFNGYLGPVRAYAAEIFREEHQALGLSTVSAAWGIGLIIGPSLGGYLAQPVEKYPNIFPKDSFWDKFPYFLPNLITSAFAFVVAIGCIWIPETLHNHNSSNEFTEYAEALENGIDGTDNEKITKKNENLFLNWPLMSSVIAYCVFSLHDIAYQEIFSLWAVSPPSLGGLNFTTNDVGNILSVSGLALIIYQLALYPSVQRASGAIGSTRISALLTIPLLQSYPFIALFSGLALFIGLSIASSLKSILSITIVTGLFVQQNRVVEQHQRGAANGIAMTGMSLFKAIGPASGGAM 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01003 438 CDD MFS_SLC46_TetA_like 45 438 - -
Vimu5g01003 438 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 438 IPR020846 GO:0022857
Vimu5g01003 438 Pfam Major Facilitator Superfamily 46 432 IPR011701 GO:0022857|GO:0055085
Vimu5g01003 438 Gene3D MFS general substrate transporter like domains 40 438 IPR036259 -
Vimu5g01003 438 PRINTS Tetracycline resistance protein signature 114 138 IPR001958 GO:0022857
Vimu5g01003 438 PRINTS Tetracycline resistance protein signature 171 193 IPR001958 GO:0022857
Vimu5g01003 438 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 36 438 - -
Vimu5g01003 438 SUPERFAMILY MFS general substrate transporter 42 438 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01003 Vimu-Chr5 15911543 15916386 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01003 5 15911543 15916386 Vimu5g01003 5 15911543 15916386 ECH