Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00978 ATGAAGGATGGTGGCAGAAAACAAGGTGTAATGTCACCATGTGCAGCATGCAAGCTTCTTCGAAGGAGATGTGCACAGGATTGTGTGTTTGCTCCTTATTTTCCTGCAGATGAGCCACACAAGTTTGCCAGTGTGCACAGGGTTTTTGGAGCTAGCAATGTCAACAAAATGTTACAGGAACTACCAGAGTACCAACGAAGTGATGCTGTTAGTTCAATGGTATACGAAGCCAATGCAAGGGTGAGAGATCCCGTGTATGGATGTGTGGGAGCCATATCTTCTCTGCAACAACAAGTTGATGTTTTACAAACCCAGTTAGCACTTGCACAAGCAGAGGTTGTGCACATGAAACTGAGCCAAGTTTCAACTTCCTCTGAACAAAAAGCAGTGCCTGCAACATCCAATTCATCCTCAGAGAACTTATCTCCATCAAGTAAACTTGCCAAAACCCTTTTTGCTATGGACATGGTCGTTGATCAGCCAAACATGGGAGTGTCTTTGTGGTCATATTAG 513 0.4425 MKDGGRKQGVMSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHRVFGASNVNKMLQELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMKLSQVSTSSEQKAVPATSNSSSENLSPSSKLAKTLFAMDMVVDQPNMGVSLWSY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00978 170 MobiDBLite consensus disorder prediction 124 143 - -
Vimu5g00978 170 Coils Coil 92 112 - -
Vimu5g00978 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 140 - -
Vimu5g00978 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vimu5g00978 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00978 Vimu-Chr5 14942534 14946602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00978 1 169 AS2 family AT1G31320 66.474 2.11e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu5g00978 LOB 3.5e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00978 5 14942534 14946602 Vimu5g00978 5 14942534 14946602 ECH