Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00970 TCTCTCCTCCAGAAACCGGCTGTCTTGGAATCCGACAACAGCACACTCTCCTACAACAACAAGGTTGTTCCCGTTTCCAGAAAACGCTCCAGAGATTCCATCCACGACAACAATTTCCCTTTCCATCCATACCCTCAGAAGAAAACCGATTCTTTTTCCTTCCTTGGCGAAGACATTTCTTCTCACATCCATCGTCAACAGCTCGACCTCGATGCCCTCGTCTCCCAACACATGGAGAAGGTTAGGATGGAGTTAGAAGAAAAAAGAAAGCGGCAAGCTAGAAGATTGATGGAGAGCATTGAGGTGGAAATGGCGAAGAGGCTGAGAGCGAAAGAAGAAGAGATTTTGAAGATAGAAAAATTGAATTGGGTTTTGGAAGAGAAAGTGAGATCACTGAGCATCGAGAATCAGTTTTGGCGCGACCTGGCTCAGACCAACGAGGCCACCGCCAATGTCCTCCGCACCAATCTCGAGCAGGTCCTCGCGCAGGTAGCAGCGCCACCGCACACGGCTGATGAAGATGCGGAGTCGTGCTGCGGGAGCAGCGACGAGGGGTGGCGTACGTTAGCCACCGGGGCGCAGGACAAGGAAAAGGAAGGTTGCAGCGAAATAAAAGAAAATATTATTATTGTTAATAATAATAATAATAAAAACAAATATAATGATAATGGAAAAAGCGGTGGGAAGAGATTGTGCAGAAAGTGTGGGGAAAAGGAATCGTGCGTGCTTATCTTACCGTGCAGGCACCTATGTGTCTGCACAGGTTGCGGGTCTAGTTTAGACTCTTGTCCTGTTTGTAAATCCATCAAAAATGCCAGTGTTCATGTAAACATGACATTATAA 843 0.4686 SLLQKPAVLESDNSTLSYNNKVVPVSRKRSRDSIHDNNFPFHPYPQKKTDSFSFLGEDISSHIHRQQLDLDALVSQHMEKVRMELEEKRKRQARRLMESIEVEMAKRLRAKEEEILKIEKLNWVLEEKVRSLSIENQFWRDLAQTNEATANVLRTNLEQVLAQVAAPPHTADEDAESCCGSSDEGWRTLATGAQDKEKEGCSEIKENIIIVNNNNNKNKYNDNGKSGGKRLCRKCGEKESCVLILPCRHLCVCTGCGSSLDSCPVCKSIKNASVHVNMTL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00970 280 Coils Coil 83 103 - -
Vimu5g00970 280 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 212 278 - -
Vimu5g00970 280 CDD mRING-HC-C3HC5_CGRF1-like 230 267 - -
Vimu5g00970 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 278 IPR013083 -
Vimu5g00970 280 PIRSF SBP1_RNase_bind 9 279 IPR017066 -
Vimu5g00970 280 ProSiteProfiles Zinc finger RING-type profile. 232 267 IPR001841 -
Vimu5g00970 280 Pfam Zinc finger, C3HC4 type (RING finger) 229 268 - -
Vimu5g00970 280 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 14 276 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00970 Vimu-Chr5 14391927 14393104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00970 231 268 Miscellaneous Gene Families AT2G21380 36.842 6.04e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00970 5 14391927 14393104 Vimu5g00970 5 14391927 14393104 ECH