Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00957 ATGGACGACGCAAACGCTACGGTGACGACTCTAGCGGAACTCCTTCAGTCTCCTCGCCCTGTCACTGCCACTGCCCATTCCGTCTTCTCTTCCACGCCCCCGCCGCATCGCTCCACCACCTGCTGTGTCCTTACAGCTCTTCCCCGCTCAACCGTCCTCGTCGGAACCCTAACCCTCCCCGCCCTCTCCCCTCCCTGCTCCTGCCTCCGCTTCTCCGACGCCTCCGCTACCCTCTGCTGCGACCTCCTCCGTTTCCGCCCCGCCGCTCTGAACAGGGAAATACGCGTCACCGCCTGGAATTTCATTCCCTTCAAGCGCCACGGCTGCGATGTCGCCCACGGCCTATTAGAGATTATCAATTGGCGCTTCTCCGACACCAACCAAGGGTCCAACTCTGTGGATTCGCTTCCGCTGGCGCCGAATTGTGTCCGACAATCCGGTGCCAGAATGAGAAGCCTCCACGGTGTGGTGGAGTCCGTTGGTCCCCTCTTTGTCGTGCAGTGTACGATGGCGGCTAGTACCTCTGGCTTGAATTCAGGCTCTAAGGTGAACCTGCCAGGGTTTTCAGTGCAATTGGTGTGTTGTGAGTGTAGGTTTTGTTGTTCCAAGGAGGTTTTGATTGGCAAATTGAATGAGAGTAGGAAGGGACATTCTTTTACCAAAATGGAGATTGTGTATTTTTGTGGCAGTGCTTCCTCTTGGCACCCTGCAATCACCAAGCTAATTGACGAACGCGTTGTGGTGTCTGGTTTGAAGAAGAAGCTAGTTTACCTGACGAAGGAGGATTCTCGAGAGATGTATGTGACTAAAGATGAGTCGGTTCTGCATGTTGGGTCTTGTTCGGAGAAATGCATGCCAAGCCTGAAGAGTGAGATCAAGGGAAAGGGTGAATGTGGTTCTTATATTGGTGTAGTTAAAGGTGCGTACATGCAAGGGATGGTTCTGGAGTTGGACCATGATGTGTGGCTTCTTTTAACTGATCAACTGCATACCTCGATGCATGGTCTGAGAGTTGGCTCCATTATATCTGTAAGAAATGTGCATATTGTGAATCCGCACTTTTCGTGGACAAAAGTAATTATTCTTGGGGCCTGCATCAAGACCAGCATTATTGTGCAATCCTTCTCCCCGTGCCAAACTGTGTGTAATGTAGTTTTTCCTTCTGCCGGTATGCTAGGGAAGTTCATTCAGTCGTTACCATTTTCTGCAAGACTCTGGGTATTACTTCTTGTCTCAAGCTTCCGGAAAAAGTTTGATGGTATCTTATCTGACAAGGAGATTTTGGGATCAAAACATAAAGAAGGGCTAGTTCAGATGTATGCTAGTTCACTTTTCTCTTGGTCAATATTTCAAACTCAGCAAGGTGCTCCTGTGTGGCTGTGCACACATGACTTGATTGGTTGTGGTAGAGTACTGAATTGCAGTTTTCTGAAATTGGTAATACCGATCTCTATCTTCATTTGTCACTGTATACACACCTTGCTAAGAATTATGAAGTCGGGAAATCACTATAAATTATTGCCTATTGGCAACCAGTTCAGTATTTTATCACGTGAAGCAAGATATAATGGTAGATCACTTAGGAGGATCATTCAAAGTGAAGATGTAGGTGTTGTTGTGCTTGGGTACCTTAAGGTTGATCCATCGACTAGAAGACTGCAGCTGGTTGATGCAACTGGTGGTGTTGATATTGTTATACCAGACCTTCCCTTAACTTGGAACCCCAACGAAATATATGAGGTGACGGACTATGAGGTTTTTATGGACAAAATAGACGAACCTGTGGATCAGATTGAAAGGCTTGGGAGTGAGTCATTATCATGTAGAACAATCTTTAATTGCTCCAAAGCAGAAAGAGAATTAAGCACTCCATTTTTTGTTTGCTGTCATTGGAAGAATGTTAAATGCAGAAACATTCCCCTTTACTCATGCATAAATAGTAAGAATGAAAGTGAGACACTAGAGCCTGGATCCTACCATGTGCTTAGAGTATCTCACAAATTTCCTCTTCAAGAAAAGATCCATGTAAAAGACTTGCTGAAGTATTTTGATGTGATAAAGGAGTACTCTAATAAAGCAGGATGTAGCAAGTCAAGTACTTTTGTTGAAGCCATGCTTTTTCCATTTATTTTATTGTTTGATGGGAAGAGTGGAATTGCTCGTCCATCCAACGCTTCTTGGGACAAGACAAAGGAACTTTCAAAATCTTGTCTGAGTGGTAATAATGAATATAAATTTTCCAATAAGAGGCAGAAACTTGTTAAGGAATCAGTAAGTTCATCAAAGGAAGAATTTCAAACTTCCATATATGAGCTGAGTGCTTGTTCTAATTCTTCCAGGAAACCAGAAGAGAACAGAAAATGTGTCAACATGAGATCTTCTCATGATTTATCTTGTCTGGTTACTTTTAAAAGCCTCCAAAGTGAGAATGAGGTTTGCCCAGCTATCTTGCGTCCTGCGTTACCTATGAAAGATGCAAGCTTAAATTCAAAACCTTCTTCAAGGAAAATTTTGCTAGAGTTCTCATCAGATAGATTTTTAAAGTACCAGTTGTTGCAGATTGGTGATTATTACATCATAGATAATAAGAGAAGGGATTGCTTTGGAAGTACAAAAGATGTTGACTTTGGTAGGAGTGACAGTGTTAAATTACTTATTGATTCCGGAAAACGTATTTGGAGCCTTTCATTTATTTATGATGAGAACCTTTCTGATCATCTATCAGATTATACATCTGCAAAAGATTCTTTATCTCCTTCGGCTGATGGAGTTTCATCTAATCATCAAAATCTTCTGCCGAAGTCCAATAGTGAACCTTCCAGTGTCAGTTCAGATGTTTGCCTATATCTTCCCATCAGTCTTGCAGATGTCTTTGAGGATAATGTTATGGAATTGGAAAATAGTCTAAGCTTGCAGTCTGTAATATCAGAAGATAGTGCTAACCTTTCTTTAGGTACTGGGACTTCAGAGGATAGACCTAAATCTTGTTTTGGAACTCAGAGATCAAACAGCCTGTTCCCTGAGGGCAATTTGATGTCTCTTGAGGGAAATGTGATTGAAATTCATAAAAATGGCTCTGGTTTCTTCAGTTCATGCTCAAGTGGAGCAAACGTTGATTCTCTTCAGTTGACAGGTCTCGTTGGGACTAGAAGCAATTTCTGCATTCACGTTTTAGTGCATCACCATATTGTGAATATTTGTGGTTCTGTAAATAAACATACTTTCCCTACTGGATTTGGACCTGGTGTACGTGCAGTATTTCATCGAATTCTCTATGCAAGGGCACAAAATAAATTTATGTTGCTGCCTGTGTCATTTATTGTAATAAAATCCATAAAAGTATGTGATAAACAATGCGGTGACAGGCCCTCTCTTATAAGCTCTACTAAAGATGCCGACGATGCATCTCGAGAGTATATCTCTTGTTTGATCTCTGAATTGCCTCAGGGCTTGACCCACAAGAAAATAGTGCTTCGATGCAGGGTGGTTGCAGTCCTTGTTTTAGTTATAGAGAAAAAGACCACAAATTTTATTGCAGAAACAAAAGTTAATGCTCAGGGGACTCTTTTGGACATTCCACTTGCTTGTTTTTTGTTGGAAGATGGATCATCATCATGTTGTTGCTGGGCTAGTGCTGAAAGGGCAGCAACTTTGTTGAGACTACGTGAAGAACTAACCACATCCCATCATCTAGGGAGAATTTTGAAAAAGCACAAAAAAATTACAGTGAAAAGCCATGGATTATCTGTTGATTCTCCTTGCCAAGATCATATTTTTACAGTTGCTTCTGGGAATGCTCTTTGCAGTTCTGACGAAAACATCCTCAAGTTCATTATATGCAATGCATGCATCGGAGGAATATGGAATGTTGTTGCTGGTGGGATGGATGCAGAGGAAACAAGACAGTTGGGAGAGGAATACCTCACAGAAATGCTGAATGTGCATAACTTGCGGAATATGTGGGCCGAAGAAGTCTCTTACCCACGCACTCGGGCTGAAGCAAGACGTATGATTCAGGAACTTCTGAAAAATTAA 4035 0.4243 MDDANATVTTLAELLQSPRPVTATAHSVFSSTPPPHRSTTCCVLTALPRSTVLVGTLTLPALSPPCSCLRFSDASATLCCDLLRFRPAALNREIRVTAWNFIPFKRHGCDVAHGLLEIINWRFSDTNQGSNSVDSLPLAPNCVRQSGARMRSLHGVVESVGPLFVVQCTMAASTSGLNSGSKVNLPGFSVQLVCCECRFCCSKEVLIGKLNESRKGHSFTKMEIVYFCGSASSWHPAITKLIDERVVVSGLKKKLVYLTKEDSREMYVTKDESVLHVGSCSEKCMPSLKSEIKGKGECGSYIGVVKGAYMQGMVLELDHDVWLLLTDQLHTSMHGLRVGSIISVRNVHIVNPHFSWTKVIILGACIKTSIIVQSFSPCQTVCNVVFPSAGMLGKFIQSLPFSARLWVLLLVSSFRKKFDGILSDKEILGSKHKEGLVQMYASSLFSWSIFQTQQGAPVWLCTHDLIGCGRVLNCSFLKLVIPISIFICHCIHTLLRIMKSGNHYKLLPIGNQFSILSREARYNGRSLRRIIQSEDVGVVVLGYLKVDPSTRRLQLVDATGGVDIVIPDLPLTWNPNEIYEVTDYEVFMDKIDEPVDQIERLGSESLSCRTIFNCSKAERELSTPFFVCCHWKNVKCRNIPLYSCINSKNESETLEPGSYHVLRVSHKFPLQEKIHVKDLLKYFDVIKEYSNKAGCSKSSTFVEAMLFPFILLFDGKSGIARPSNASWDKTKELSKSCLSGNNEYKFSNKRQKLVKESVSSSKEEFQTSIYELSACSNSSRKPEENRKCVNMRSSHDLSCLVTFKSLQSENEVCPAILRPALPMKDASLNSKPSSRKILLEFSSDRFLKYQLLQIGDYYIIDNKRRDCFGSTKDVDFGRSDSVKLLIDSGKRIWSLSFIYDENLSDHLSDYTSAKDSLSPSADGVSSNHQNLLPKSNSEPSSVSSDVCLYLPISLADVFEDNVMELENSLSLQSVISEDSANLSLGTGTSEDRPKSCFGTQRSNSLFPEGNLMSLEGNVIEIHKNGSGFFSSCSSGANVDSLQLTGLVGTRSNFCIHVLVHHHIVNICGSVNKHTFPTGFGPGVRAVFHRILYARAQNKFMLLPVSFIVIKSIKVCDKQCGDRPSLISSTKDADDASREYISCLISELPQGLTHKKIVLRCRVVAVLVLVIEKKTTNFIAETKVNAQGTLLDIPLACFLLEDGSSSCCCWASAERAATLLRLREELTTSHHLGRILKKHKKITVKSHGLSVDSPCQDHIFTVASGNALCSSDENILKFIICNACIGGIWNVVAGGMDAEETRQLGEEYLTEMLNVHNLRNMWAEEVSYPRTRAEARRMIQELLKN 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00957 1344 Pfam CST, telomere maintenance, complex subunit CTC1 50 340 IPR028262 GO:0000723
Vimu5g00957 1344 Coils Coil 1331 1344 - -
Vimu5g00957 1344 MobiDBLite consensus disorder prediction 918 942 - -
Vimu5g00957 1344 PANTHER CST COMPLEX SUBUNIT CTC1 5 1343 IPR042617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00957 Vimu-Chr5 13823581 13837029 Dispersed/Transposed