Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00931 ATGTCTGTTATATTGGTGTTTCTTCTTCTTGGAATATTATCTTCCATTACAGCTGCAGAATCCATAGGAGTTTGCTATGGAGTACTTGGCGATTCTCTACCATCAAAGCAAGAAGTTGTTGATCTATACGAAAGCAATGGCATAGGTAAAATGCGTATATATTTTCCAGAACCAGACACACTGGAAGCTCTAAAAGGTTCAGGAATTGAGTTGATCATGGACGTGGCAAAGGAATCTCTTCAATCTCTCACAGACCAAAACGCTGCCATGGATTGGGTGAACACAAACGTCGTACCCTATGCACAAGAAGTAAATATCAAGTACATTTCAGTAGGAAACGAAATTCGTCCAGATTACAACGAGGCTCAGTACATTTTGCCTGCCATGACCAACATTCACAATGCAATTTCATCACTCAATTTGCAAGCTCAAATCAAAGTCTCCACAGCAATAGACTCAACCCTAATTTCCAACCCCTACCCACCTAATGATGGAGTTTTCAATTCACAGTCATACATAATACCCATTGTTGAGTTCTTGAAGAACATCGGAGCCCCACTTCTTACAAACATTTACCCTTACTTTGCTTACATTGGTGATAAAGAAAACATTCCTCTTGAATATGCTCTTTTCACCCAACAGGGGGAGAACAGTGTTGGGTACCAGAACCTGTTTGATGCAATGCTTGATTCAGTATATGCTGCACTTGAGAAAGCGGGAGCAGGTGATGTGAAGATTGTTGTTTCTGAGAGTGGGTGGCCATCTGCAGGTGGAGATGGGGCTTCAGTAGAAAATGCAGCCACTTACTATGCCAATTTGATTGCTCATGCAAAGAGTGGAAGTGGAACTCCGAAGAGACCAGGTGGGTCTATAGAGACCTACTTGTTTGCAATGTTTAATGAAAATAACAAGCAGGGTGAGGAATCTGAGAAGCATTTTGGTCTCTTCACTCCTGATAAATCACCTAAATACCAACTTACTTTCAATTAG 990 0.4121 MSVILVFLLLGILSSITAAESIGVCYGVLGDSLPSKQEVVDLYESNGIGKMRIYFPEPDTLEALKGSGIELIMDVAKESLQSLTDQNAAMDWVNTNVVPYAQEVNIKYISVGNEIRPDYNEAQYILPAMTNIHNAISSLNLQAQIKVSTAIDSTLISNPYPPNDGVFNSQSYIIPIVEFLKNIGAPLLTNIYPYFAYIGDKENIPLEYALFTQQGENSVGYQNLFDAMLDSVYAALEKAGAGDVKIVVSESGWPSAGGDGASVENAATYYANLIAHAKSGSGTPKRPGGSIETYLFAMFNENNKQGEESEKHFGLFTPDKSPKYQLTFN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00931 329 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 326 IPR044965 GO:0004553|GO:0005975
Vimu5g00931 329 SUPERFAMILY (Trans)glycosidases 22 328 IPR017853 -
Vimu5g00931 329 FunFam glucan endo-1,3-beta-glucosidase, basic 22 328 - -
Vimu5g00931 329 ProSitePatterns Glycosyl hydrolases family 17 signature. 244 257 IPR000490 GO:0004553|GO:0005975
Vimu5g00931 329 Gene3D Glycosidases 20 329 - -
Vimu5g00931 329 Pfam Glycosyl hydrolases family 17 22 328 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00931 Vimu-Chr5 13290049 13292580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00931 17 329 Glycoside Hydrolase AT3G57240 51.553 1.36e-103 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00931 5 13290049 13292580 Vimu5g00931 5 13290049 13292580 ECH