Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00929 ATGGAGACCCTTTGCTCTGCTGTGGTGTTCCCATCTTTCAAAATCAGAACTTCACAGTTTTCCAAATGTGGCAGCATCAGGGCTTCTCTTGCCATTGAGCAACAAACTTCACAGACTAAGGTTGCTCTCCTAAGAATTGGCACCAGAGGAAGTCCACTAGCTCTGGCTCAAGCATTCGAGACCAGAGACAAGCTCATGGCATCGCATCCAGAGCTTGCAGTAGAAGGGGCTATTCAGATTGTAATAATAAAAACAACTGGTGATAAAATACTGTCACAACCACTTGCAGACATCGGTGGGAAGGGCCTTTTCACAAAAGAAATAGATGAGGCACTTATAAATGGTGACATTGACATTGCTGTTCATTCAATGAAAGATGTTCCTACTTACTTACCTGATAAAACAATTCTACCATGTAACCTTCTACGTGAGGATGTTAGAGATGCATTTATATCCTTGAGTGCAGCTTCACTGGCTGACCTACCCTCTGGAAGTATTGTTGGTACTGCTTCACTCAGACGAAAGTCACAAATACTCCACAGATATCCTTCTCTGAATGTGGAGGAAAATTTCCGAGGCAATGTCCAAACAAGACTGAGAAAACTCAGTGAGGGTGTTGTCCAAGCTACCCTATTGGCATTAGCTGGTCTCAAACGATTAAACATGACAGAAAATGTGACTTCAATCCTATCAATTGATGATATGCTTCCAGCTGTTGCACAAGGTGCAATTGGAATAGCCTGTAGAAGTAATGATGATAGAATGGCAGAATACCTTGCTTCACTGAATCATGCAGAAACAAAACTAGCAGTTTCCTGTGAAAGATCCTTCCTTGAAACATTAGAAGGGTCTTGCCGCACTCCTATTGCAGGCTATTGTAGCAGAAACGTGGATGGAAATTGCTTATTTAGAGGATTAGTTGCTTCCCCTGATGGAACCAGTGTGCTTGAAACTTCCAGAGTTGGTCCATATGTTGCTGAAGATATGATTCAGATGGGTAAAGATGCTGGGGAGGAGCTTCTTTCTCGTGCTGGACCTGGCTTTTCAGTAGCTAGCACTTGA 1062 0.4294 METLCSAVVFPSFKIRTSQFSKCGSIRASLAIEQQTSQTKVALLRIGTRGSPLALAQAFETRDKLMASHPELAVEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPDKTILPCNLLREDVRDAFISLSAASLADLPSGSIVGTASLRRKSQILHRYPSLNVEENFRGNVQTRLRKLSEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGIACRSNDDRMAEYLASLNHAETKLAVSCERSFLETLEGSCRTPIAGYCSRNVDGNCLFRGLVASPDGTSVLETSRVGPYVAEDMIQMGKDAGEELLSRAGPGFSVAST 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00929 353 FunFam Porphobilinogen deaminase 44 147 - -
Vimu5g00929 353 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 274 290 IPR022419 GO:0004418|GO:0018160|GO:0033014
Vimu5g00929 353 PRINTS Porphobilinogen deaminase signature 186 203 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 PRINTS Porphobilinogen deaminase signature 166 183 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 PRINTS Porphobilinogen deaminase signature 118 137 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 PRINTS Porphobilinogen deaminase signature 273 290 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 PRINTS Porphobilinogen deaminase signature 87 107 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 CDD PBP2_PBGD_1 43 322 - -
Vimu5g00929 353 PIRSF PBGD 21 351 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 NCBIfam hydroxymethylbilane synthase 44 342 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 Gene3D - 264 348 IPR036803 GO:0004418|GO:0033014
Vimu5g00929 353 PANTHER PORPHOBILINOGEN DEAMINASE 38 348 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 FunFam Porphobilinogen deaminase 264 350 - -
Vimu5g00929 353 SUPERFAMILY Periplasmic binding protein-like II 44 261 - -
Vimu5g00929 353 FunFam Porphobilinogen deaminase, chloroplastic 148 245 - -
Vimu5g00929 353 Pfam Porphobilinogen deaminase, C-terminal domain 269 341 IPR022418 GO:0004418|GO:0033014
Vimu5g00929 353 Gene3D - 44 253 - -
Vimu5g00929 353 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 263 346 IPR036803 GO:0004418|GO:0033014
Vimu5g00929 353 Hamap Porphobilinogen deaminase [hemC]. 43 343 IPR000860 GO:0004418|GO:0033014
Vimu5g00929 353 Gene3D - 145 245 - -
Vimu5g00929 353 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 44 256 IPR022417 GO:0004418|GO:0033014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00929 Vimu-Chr5 13219449 13222489 Dispersed