Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00924 ATGGATTGGATTCTTGTTGATGATGAAGTACGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATCAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAACCTCCTGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGAATACTATATTTTCTCGCTTTGGAACTGTATCATCGGCAGAAATCATCCGTGATCACAAAACTGGTGACAGTTTATGCTATGCTTTCATAGAATTTGAGGACAAACGGGCATGTGAGGAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAATTGTGGTCCCAATACAGGCGGAAAGATCAAAAGGGTAAAGGGTTACGTTCACCGTGCACACTGCTCTTGGAGTTGCCGGTGCTTGCTGCCCTCACTCACTTTCGCAGTGGAGGATGCTTCAAATGTGGCTCTACAGATCATATTGCCAAGGACTGCACTGGAGATGCTACAATGAAACAACCACAAGCAAAATACATTTTAAAGGATGATAATACCCAACGTGGTGGAGATAATTCGAGATATGACATGGTTTTTGATGGAGATGATAACCCAGAAAGTCCAAGGCAAGATGTAAAACACCGAAAGCATGACAGGGATGACCCAGTTGAGAAAAAAGTTAGGGAAGAAAATTTTAAAGATCATAGAAGTAGTAGGCATCAGGATACGGTAAGAGATAGGTACGGTGATAGAAGCAGAGAGCATGGGGGAAATGGAGAAAACAAAGCACGATATGACAGAGGTGCAAGAGATTTGGATTCGAATGCTGACAAGAAAGACAGAGATAGGCACAAGGGTAGACATGGAAATGATGATTACAGGTGGAAAGTTGATCATGAATCTAGAAAAGAAGAGGATGATGGCTACAAGCGTAAAGATGAGCGAGACTCTAGAAGAAGATATGAAGATGATAACTACAAGCGTAAAGATGAGCGAGACCCTAGAAGAAGAGATGAAGATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGGTTATAGGAAGAGACCTGAAGACAGTGGAAAGCAAGATGTGAAGATTGATTCTGGACGAAGAAAGAGAAGTCCAGGTGATGATGATTACAAAAATGGAAGGAAAGATGAAGATTACAGACATAGAAAGGAAGAACGAGGGTATAAAAGGCAAGATATTGAAGCTGATGAGGATTACAGACGTAAAAGGGAGGATGGAGATTACAGACATAGAAGGGAGGAACGTGGACACAAAAGACAAGATGTTGAAGCTGATGATTATCCTCATAAGAGGCACCATGGTGACAGGAGATGA 1443 0.4123 MDWILVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKRACEEAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGLRSPCTLLLELPVLAALTHFRSGGCFKCGSTDHIAKDCTGDATMKQPQAKYILKDDNTQRGGDNSRYDMVFDGDDNPESPRQDVKHRKHDRDDPVEKKVREENFKDHRSSRHQDTVRDRYGDRSREHGGNGENKARYDRGARDLDSNADKKDRDRHKGRHGNDDYRWKVDHESRKEEDDGYKRKDERDSRRRYEDDNYKRKDERDPRRRDEDDRRNTDSSHLERRNDRGYRKRPEDSGKQDVKIDSGRRKRSPGDDDYKNGRKDEDYRHRKEERGYKRQDIEADEDYRRKREDGDYRHRREERGHKRQDVEADDYPHKRHHGDRR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00924 480 Gene3D - 45 159 IPR012677 -
Vimu5g00924 480 SMART rrm1_1 61 134 IPR000504 GO:0003723
Vimu5g00924 480 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 8 341 IPR035542 -
Vimu5g00924 480 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
Vimu5g00924 480 MobiDBLite consensus disorder prediction 211 480 - -
Vimu5g00924 480 MobiDBLite consensus disorder prediction 208 480 - -
Vimu5g00924 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 132 IPR000504 GO:0003723
Vimu5g00924 480 SUPERFAMILY RNA-binding domain, RBD 46 152 IPR035979 GO:0003676
Vimu5g00924 480 CDD RRM_PPIL4 57 139 - -
Vimu5g00924 480 FunFam Peptidyl-prolyl cis-trans isomerase 4 140 - -
Vimu5g00924 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Vimu5g00924 480 ProSiteProfiles Zinc finger CCHC-type profile. 180 193 IPR001878 GO:0003676|GO:0008270
Vimu5g00924 480 Pfam Zinc knuckle 179 194 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00924 62 137 Eukaryotic Initiation Factors Gene Family AT4G34110 34.211 4.31e-08 53.9