Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00908 ATGCTCCACCTCCGGCAACGCCGCGACGCCACGCCGGCCACCACAAGGTGGCGCAACACGTTTGAGGAGAATCTGGAGCAGTGGCCGCACCTCAACGAACTAGTCCATTGCTATACCACGGATTGGGTCAAGGATGAGAACAAGTACGGACACTATGACTCCGTTGGAACGCCGTCGTTTCATAACCAGATATATGAAGGCCCTGACACTGACATTGAGACCGAAATGCGGCTTGCTGGGGCAAGGCGAACGAAGGGTGATGATATTAGTGAAGATGATGCACCAAGTACTTCGGGAAGGCAGTTTCCAGAAGGTGCGGATGGTGACTTGCTTCATGCAGATGTTCCAAAGCATATTGGTCAATCTCCCCTTCCTGCTTATGAACCAGCATTTGATTGGGAAAATGAGAGGGCATTGATATTTGGACAAAGGATACCGGAAACTCCTATATCGCATGGAATGAAGATATCTGTAAAAGTTCAGTCTTTACAATTTCAAGCAGGATTGGTTGAGCCCTTTTACGGTACAATTTGCTTATACAATAGGGAGAGAAGAGAAAAGTTGTCAGAAGACTTTTACTTTCAAGTCTTACCAACAGAAATGCAGGATGTAAGCTATGCCAAAATTACATATGAACCTCGTGCAGTCTTTTACTTAGATGCACCATCTGCATCAGTTTGTTTGTTAATCCAGTTAGAGAAGCATGCCACTGAAGATGGTGGGGTTACTGCTTCTGTTTATTCACGTAAAGATCCAGTGCACTTGACTGAGAGAGAGAAGCAAAAACTGCAGGTGTGGTCTAAAATCATGCCTTACAAAGAGTCCTTCGCATGGACCATTGTATCATTATTTGATAGCAGTATTGGTGCAGCTTCAGTAGGGCCTGCTTCCCCGAGCAGCCCTCTTGCTCCAAGTGTATCTGGTTCAAGTTCTCATGAAGGTGTTTTTGAGACTAGTGCAAAAATGTCTTTAGATGGAAAGCTGAGTTACTCTAATGGAAATTCTGTGGTAGTTGAGGTTTCAACTTTAAATAAAGTAAAAGAATGCTATACGGAGGAATCACTTCAGGATCCTAAACGTAAGGTGCACAAACCGGTCAAAGGTGTTTTGAGGCTGGAAATTGAGAAACACCAGATTTCCCATGCTGATTTGGAGAATGTGTCAGAAAGTGGAAGTATAACCAATGATTCTGTTGACCCAGGGGATCGTGTTGCAGATTCACTGTCTGGAAAGTATACTAGTAATGGCTGTGATGATCCTCAGGGTAGCATCCCCAGGGTAGTATCTCCAGCTTCCGGAAATGGAGCTACTCAACATGGAAATTCAGATTTTAATGCTGAAGATTTCCATGCATTTGACTTCCGCACTACAACAAGAAACGAGCCTTTTTTGCAACTTTTTCACTGCCTATATGTGTATCCGTTGACACTAAGTTTGGGTAGGAAAAGGAATTTGTTTATACGGGTTGAACTCAGGGAGGATGATGGTGATATCCGTAGGCAGCCATTGGAGGCAATATATCCTAGAGATCCAGGTGTGGATGCATCTCTTCAGAAGTGGAGTCACACCCAAATTGCTGTTGGAGCTAGGGTTGCTTGCTACCATGATGAAATTAAACTTTCCCTCCCTGCTATGTGGACACCAACGCACCACCTTCTATTTACTTTATTTCATGTTGATCTACAAACGAAATTAGAGTCTCCGAAGCCAGTAGTAATTGGATATGCAGCACTTCCTTTATCTTCCCATGCCCAGCTGCGGTCTGAAATAAATCTTCCGATTATGAGAGAATTGGTTCCTCACTATCTACAGGATTCAGGACGGGAGAGATTGGATTATTTGGAAGATGGGAAAAGTGTGTTCAGATTGCGTTTACGACTATGTTCTTCGTTATACCCTATCAATGAACGTATTAGAGATTTCTTTCTTGAATATGATCGGCACACTCTTCGAACAAGTCCACCATGGGGTTCTGAACTTCTGGAGGCTATTAATAGTTTGAAGAATGTTGATTCCACTGCTTTACTTCAGTTTCTTCACCCAATTCTTAACATGCTACTCCATCTTATTGGCAATGGCGGAGAAACACTCCAGGTTGCTGCATTTCGGGCCATGGTTAATATTGTAACCAGAGGTATTAAGAACTTCAAATACAGTTTCTTGATCAAAATCTCTTTGAAGGCCGGGAACTGGAGTTGGAGAACTTCGGGCAACCAGAAAATATTTGTTACTGTTGTTATTACTCGTAGTTCATGGGTGCAGCAGGAGTCGGTTGATGATGCCGAAAGAAATCATTTTCTAGTCAACTATGTTGACTGTGCTTTTGATGATTTTGGTGGTCGTCAACCACCTGTATATCCCGGACTATCCACTGTTTGGGGAAGCTTGGCACGAAGTAAGGCCAAAGGTTATCGTGTTGGACCTGTGTATGATGATGTTTTGGCTATGGCTTGGTTTTTTCTGGAGTTAATTGTTAAATCAATGGCATTGGAGAAGACTCGCCTGTTCTATCACAGCCTTCCAATAGGGGGAGCTGGGGAAACAAACTTGGGTTTAAGGACTAGATCTTTTAATCCTGGCTCCAAAAACTGTGAAGATATCCCACCAATGCAGTTGAAGGATGGTGTATTCAGATGTATAATGCAGTTGTATGATTGCCTTCTCACTGAAGTGCATGAGCGCTGTAAGAAGGGTTTAAGCTTGGCAAAACGCTTGAATAGTAGTTTGGCTTTCTTTTGTTATGATCTTCTATCCATCATTGAGCCCCGACAGGTTTTTGAGCTGCTTGCCACCAAAACATGGCACCATGGTGCCATTGGGGTCGCATTTGGCCTCAAGAATGCAGATGGAGGAAATAGAATACGAAGAAAGTCTAGAGAATATTATGGAATTTGTGATCTCTTTGGAGAGGAAGAAGTCTCAAGTCAGTGCAACCTCCTGACCCAGACCCAAGTATCATTATATCTTGACAAGTTTTCTGGTGTTTGTCAATCAGTTCTTCATGAATGCAAACTTACCTTTTTACAAATAATATGTGATCAAGATCTTTTTGTGGAAATGCCTGGAAGGGACCCTTCAGATAGGAACTACCTTTCTTCTGTATTAATACAAGAACTCTTTGTTACTTGGGATCATGAAGATGTGTCTTTACGAGCAAAGGCGGCAAGAATCTTGGTAGTGCTCTTGTGCAAACATGAGTTTGATGTGAGATACCAGAAGCCAGAGGATAAGTTGTATATTGCTCAACTATATTTTCCACTTGTCGGACAGATATTAGATGAAATGCCTGTTTTCTACAACCTCAATGCTGTTGAAAAGAGGGAAGTTTCTATTGTAATTTTGCAAATAGTTCGAAACCTTGACGATGCATCCCTTGTCAAGGCATGGCAGCAAAGCATTGCCCGGACTAGATTGTTTTTCAAGCTCATGGAGGAATGCTTGCTTCTATTTGAGCACAAAAAACCTGCTGATGGCATGTTACTTGGCTCCAGTTCTCGCAATCCGGTAGGTGAAGCACCTGCTTCCCCTAAGTACTCTGACAGACTTTCTCCTGCCATCAACAACTATCTGTCTGAGGCCTCACGGCAGGAAGTCAGGCCTCAGGGAACACCAGATAACGGGTACTTATGGCAGAGAGTTAATTCCCAGTTAAGCTCCCCTAGCCAGCCATATTCTTTGAGAGAGGCTCTAGCTCAAGCACAGTCTTCTAGGATTGGAGCTTCTGCTCAAGCACTTCGAGAATCTTTACATCCACTTTTAAGACAGAAATTGGAACTTTGGGAGGAAAATTTGAGTGCCTCAGTTAGTCTTCAGGTCTTGGAGGTGACTGAGAAATTTTCCATGATGGCTGAATCCCACAGCATTGCAACTGATTATGGAAAACTTGATTGCATAACAGTTGTGTTCATGAGCTTTTTATCCAGAAATCAGCCATTGACATTTTGGAAAGCATTTTTTCCTGTATTTAACAGTGTTTTTGATTTACATGGGGCAACTTTGATGGCAAGGGAAAATGATCGTTTTTTAAAACAAGTCACTTTCCATCTCCTCCGGCTTGCAGTTTTCCGAAATGAAAATATTAGGCAAAGGGCAGTTGTGGGCCTTCAGATACTTGTGAGGAGTTCATTTCATTACTTTATGCAGACAGCAAGATTGAGAGTCATGTTGATTATCACATTGTCTGAGCTAATGTCTGATGTGCAAGTTACTCAGATGAGATCTGATGGGAGCCTAGAGGAAAGTGGCGAAGCACGGCGACTAAGGAGGTCTTTAGATGAAATGAAGGATGAAACTAAAAGTTCCTACCTGTTGAATGAGTGTGGATTATCTGAGAATGCTCTTGTGGCTGTTCCAGAAAAAATAACAGAGAATAGATGGTCCTGGTCTGAGGTGAAATATCTCTCTGATAGCCTTCTTTTGGCCCTTGATGGCAGCTTGGAGCATGCGCTATTGGCCCCCATGATGACTATGGATAGATATGCTGCTGCTGAAAGCTTCTATAAATTGGCCATGGCATTTGCCCCTGTCCCTGATCTTCACATAATGTGGTTGCTTCATCTATGTGATGCTCATCAGGAAATGCAATCTTGGGCAGAAGCTGCTCAGTGTGCTGTTGCCGTTGCTGGTGTTGTAATGCAGGCCCTTGTTGCCAGAAACGATGGTGTGTGGAGCAAAGACCACGTTGCTGCTTTACGGAAGATTTGTCCTATGGTCAGCAATGAGATCACCTCTGAAGCATCTGCCGCTGAAGTTGAGGGATATGGTGCTTCAAAACTAACCGTTGACTCTGCCGTGAAATACTTGCAGCTTGCTAATAAGCTCTTCTCACAAGCTGAGCTTTTTCATTTCTGTGCAAGCATTCTTGAACTTGTCATCCCAGTTTACAAAAGTAGGAGGGCTTATGGACAGCTGGCTAAATGTCACACGTTACTTACCAATATCTATGAATCAATTCTTGAACAGGAATCTAGTCCAATTCCTTTTACAGATGCAACATACTACAGGGTTGGATTTTATGGTGATAGGTTTGGGAAACTTGATAAAAAGGAGTATGTCTATCGTGAGCCTCGTGATGTACGTCTAGGTGACATAATGGAAAAACTTAGTCACATATACGAGTCTAGAATGGATGGTAATCACACTTTGCATATTATTCCAGATTCTAGACAAGTGAAGGCAGAGGAGTTACAGCCTGGTGTCTGTTACCTTCAGATTACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGTAGGAGGGAAAGAATTTTCTCCCTCTCTACTGGAAGTGTTCGAGCCCGGGTATTTGACCGATTCTTGTTTGACACCCCATTTACCAAAAATGGCAAGACTCAAGGTGGATTGGAAGATCAATGGAAGAGACGTACCGTTCTTCAGACCGAGGGTTCCTTTCCAGCGTTAGTAAATAGACTATTGGTAATCAAATCCGAGTCCCTTGAATTCTCTCCAGTAGAAAATGCAATCGGAATGATTGAAACACGAACAGCTGCATTGAGAAATGAGCTTGAAGAGCCTCGAAGCTCTGAGGGTGATCAACTTCCAAGACTTCAGAGTCTACAAAGAATTCTCCAAGGCAGTGTTGCAGTACAAGTGAATAGTGGCGTCTTGAGTGTCTGCACAGCCTTCTTGTCTGGGGAGCCTGCAACAAGGTTGCGGTCACAGGAACTGCAACAACTAATAGCAGCCCTTCTTGAGTTCATGGCTGTTTGTAAACGTGCCATTCGCGTACACTTCAGATTGATTGGCGAGGAAGATCAGGATTTCCATACACAGCTTGTTAATGGTTTCCAGTCACTGACAGCAGAGTTATCACATTACATTCCTGCCATTCTCTCAGAGCTATGA 5868 0.4313 MLHLRQRRDATPATTRWRNTFEENLEQWPHLNELVHCYTTDWVKDENKYGHYDSVGTPSFHNQIYEGPDTDIETEMRLAGARRTKGDDISEDDAPSTSGRQFPEGADGDLLHADVPKHIGQSPLPAYEPAFDWENERALIFGQRIPETPISHGMKISVKVQSLQFQAGLVEPFYGTICLYNRERREKLSEDFYFQVLPTEMQDVSYAKITYEPRAVFYLDAPSASVCLLIQLEKHATEDGGVTASVYSRKDPVHLTEREKQKLQVWSKIMPYKESFAWTIVSLFDSSIGAASVGPASPSSPLAPSVSGSSSHEGVFETSAKMSLDGKLSYSNGNSVVVEVSTLNKVKECYTEESLQDPKRKVHKPVKGVLRLEIEKHQISHADLENVSESGSITNDSVDPGDRVADSLSGKYTSNGCDDPQGSIPRVVSPASGNGATQHGNSDFNAEDFHAFDFRTTTRNEPFLQLFHCLYVYPLTLSLGRKRNLFIRVELREDDGDIRRQPLEAIYPRDPGVDASLQKWSHTQIAVGARVACYHDEIKLSLPAMWTPTHHLLFTLFHVDLQTKLESPKPVVIGYAALPLSSHAQLRSEINLPIMRELVPHYLQDSGRERLDYLEDGKSVFRLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPILNMLLHLIGNGGETLQVAAFRAMVNIVTRGIKNFKYSFLIKISLKAGNWSWRTSGNQKIFVTVVITRSSWVQQESVDDAERNHFLVNYVDCAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEKTRLFYHSLPIGGAGETNLGLRTRSFNPGSKNCEDIPPMQLKDGVFRCIMQLYDCLLTEVHERCKKGLSLAKRLNSSLAFFCYDLLSIIEPRQVFELLATKTWHHGAIGVAFGLKNADGGNRIRRKSREYYGICDLFGEEEVSSQCNLLTQTQVSLYLDKFSGVCQSVLHECKLTFLQIICDQDLFVEMPGRDPSDRNYLSSVLIQELFVTWDHEDVSLRAKAARILVVLLCKHEFDVRYQKPEDKLYIAQLYFPLVGQILDEMPVFYNLNAVEKREVSIVILQIVRNLDDASLVKAWQQSIARTRLFFKLMEECLLLFEHKKPADGMLLGSSSRNPVGEAPASPKYSDRLSPAINNYLSEASRQEVRPQGTPDNGYLWQRVNSQLSSPSQPYSLREALAQAQSSRIGASAQALRESLHPLLRQKLELWEENLSASVSLQVLEVTEKFSMMAESHSIATDYGKLDCITVVFMSFLSRNQPLTFWKAFFPVFNSVFDLHGATLMARENDRFLKQVTFHLLRLAVFRNENIRQRAVVGLQILVRSSFHYFMQTARLRVMLIITLSELMSDVQVTQMRSDGSLEESGEARRLRRSLDEMKDETKSSYLLNECGLSENALVAVPEKITENRWSWSEVKYLSDSLLLALDGSLEHALLAPMMTMDRYAAAESFYKLAMAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVVMQALVARNDGVWSKDHVAALRKICPMVSNEITSEASAAEVEGYGASKLTVDSAVKYLQLANKLFSQAELFHFCASILELVIPVYKSRRAYGQLAKCHTLLTNIYESILEQESSPIPFTDATYYRVGFYGDRFGKLDKKEYVYREPRDVRLGDIMEKLSHIYESRMDGNHTLHIIPDSRQVKAEELQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGSVRARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVLQTEGSFPALVNRLLVIKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILSEL 1955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00908 1955 FunFam Guanine nucleotide exchange factor SPIKE 1 1823 1950 - -
Vimu5g00908 1955 PANTHER DEDICATOR OF CYTOKINESIS DOCK 985 1949 IPR026791 GO:0005085|GO:0007264
Vimu5g00908 1955 CDD C2_DOCK180_related 466 638 - -
Vimu5g00908 1955 SUPERFAMILY ARM repeat 661 1372 IPR016024 -
Vimu5g00908 1955 Pfam DHR-2, Lobe C 1850 1947 IPR046773 -
Vimu5g00908 1955 Pfam DHR-2, Lobe B 1721 1803 IPR046770 -
Vimu5g00908 1955 Pfam C2 domain in Dock180 and Zizimin proteins 466 636 IPR027007 -
Vimu5g00908 1955 ProSiteProfiles DOCKER domain profile. 1504 1953 IPR027357 -
Vimu5g00908 1955 MobiDBLite consensus disorder prediction 427 442 - -
Vimu5g00908 1955 Pfam DHR-2, Lobe A 1500 1653 IPR046769 -
Vimu5g00908 1955 MobiDBLite consensus disorder prediction 81 111 - -
Vimu5g00908 1955 CDD DHR2_DOCK 1511 1944 - -
Vimu5g00908 1955 ProSiteProfiles C2 DOCK-type domain profile. 467 628 IPR027007 -
Vimu5g00908 1955 Gene3D C2 domain 468 637 IPR035892 -
Vimu5g00908 1955 MobiDBLite consensus disorder prediction 412 442 - -
Vimu5g00908 1955 Gene3D - 1505 1658 IPR043161 -
Vimu5g00908 1955 Gene3D - 1823 1950 IPR043162 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00908 Vimu-Chr5 12601002 12623114 Dispersed