Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00904 ATGGATTGTTCAGCTGCAAGAAAGACTCAAAAGGCCGACCGAGAAAAGTTAAGAAGGGATCGACTCAATGAGCAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAAGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTGGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATATTTCCATGGACTGCAATGGATCATTCAGTTGTCATGGCTCCACCATCATATCCCTTTCCAATGCCAGTGGCAGTACCTCCTGGTTCAATCCCCATGCAGCCATTCCCCTACTTTACTAATCAACATCCTGCAGTCATCTCTAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTACGTTTCGCCTCCACTTCATCCAGGCTGTCGGTCCAATGTGTCTGAAAAACCAGAGTCCAAAAGCAAATCATCCAGGGAGAGCAAGGCTCAAAAGAACGAGGATTCTAATGATGTCACTACAGACCTTCAGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGTACGCCCGGTGGGACTGAGGAAAACCAAACAGATGAAGGGCAAGTTGAAACCGGTCGGTCGATAGCTGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGACACAGATGGTATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGATTTATCATCCGGACAAAGGAAATCTGGGAAGTTGTCAAGAAGGGAAAGCAGCTGCTGCTCGGAAGGGAATACATTAGGTAGGTGTTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTGCAGTTGCAAGCAGAAAGGATAATGAATGA 1092 0.4441 MDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILSDTIQLLKDLTSQVGKLKEEYATLNEESREEKNDLREEKASLKSDIDNLNNQYQQQLRTIFPWTAMDHSVVMAPPSYPFPMPVAVPPGSIPMQPFPYFTNQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGCRSNVSEKPESKSKSSRESKAQKNEDSNDVTTDLQDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTDEGQVETGRSIAENRSDEFRTDLGDDTDGMSGEGSHGKAAGVDLRNYQLDLSSGQRKSGKLSRRESSCCSEGNTLGRCSSSHSAQDSSSSSAVASRKDNE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00904 363 MobiDBLite consensus disorder prediction 274 295 - -
Vimu5g00904 363 Coils Coil 5 25 - -
Vimu5g00904 363 MobiDBLite consensus disorder prediction 251 273 - -
Vimu5g00904 363 CDD bHLH_AtILR3_like 11 82 - -
Vimu5g00904 363 PANTHER TRANSCRIPTION FACTOR BHLH121 2 225 IPR044579 GO:0003700|GO:0006879
Vimu5g00904 363 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Vimu5g00904 363 MobiDBLite consensus disorder prediction 176 217 - -
Vimu5g00904 363 Coils Coil 46 105 - -
Vimu5g00904 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Vimu5g00904 363 SMART finulus 12 62 IPR011598 GO:0046983
Vimu5g00904 363 MobiDBLite consensus disorder prediction 248 363 - -
Vimu5g00904 363 MobiDBLite consensus disorder prediction 328 363 - -
Vimu5g00904 363 MobiDBLite consensus disorder prediction 189 214 - -
Vimu5g00904 363 Gene3D - 4 81 IPR036638 GO:0046983
Vimu5g00904 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 73 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00904 Vimu-Chr5 12505365 12513364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00904 1 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.596 1.63e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g00904 HLH 9.4e-09 No_clan