Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00903 ATGGCAATGCAATGGTCCATTGTAGATGATGGCTTTATCATCGAATTTGTGATTCAGAACCACCGCAATAACGCCCATAATGGAAATTTAAGATCCGGTGAAGAAGATGGTGAAGTTTATATCTTTGATTCCATGACCTTCGGTGGTAGCAACATGCAAAACAATAACTATAGAAATTTAAGATCAAACCAAGATAGTGTTTTGATCTTTGATTCCGTGCAAAACAACTATGATTCTTTTGAAAGGTTTATAATTGAAGAAAAAACAGAAGATTCTTGCAGCATATGTCTTGAGGAACTTGCAATTGGATCAAGAGCAATTCGTTTACCTCACCCATGTTCTCATATCTTTCATAGCCACTGCATCAAAAAATGGCTCAACATCAATCACACCTGTCCTTTGTGTCGCAGGAACATATAG 420 0.369 MAMQWSIVDDGFIIEFVIQNHRNNAHNGNLRSGEEDGEVYIFDSMTFGGSNMQNNNYRNLRSNQDSVLIFDSVQNNYDSFERFIIEEKTEDSCSICLEELAIGSRAIRLPHPCSHIFHSHCIKKWLNINHTCPLCRRNI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00903 139 CDD RING-H2 93 136 - -
Vimu5g00903 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 139 IPR013083 -
Vimu5g00903 139 SMART ring_2 93 135 IPR001841 -
Vimu5g00903 139 SMART ringv_2 92 136 IPR011016 GO:0008270
Vimu5g00903 139 Pfam Ring finger domain 91 136 IPR001841 -
Vimu5g00903 139 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Vimu5g00903 139 SUPERFAMILY RING/U-box 86 139 - -
Vimu5g00903 139 PANTHER TARGET OF ERK KINASE MPK-1 64 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00903 Vimu-Chr5 12421730 12425633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00903 72 136 C3H Transcription Factor Family AT1G14200 38.235 2.55e-12 59.3