Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00901 ATGAGTGAAGAACATAGACACCATGCATGTGTGTTGTGTAGGTATCAACATAAACGTCATGATGGTAGCTGTCAATTTGGTCAGTATTTTCCCAGTAATAGAGCAATGGATTTTGAGAATGCTTGCAGGCTTTTTGGTTTGGCCAATTTGCTTAGATTGATGCGTTCTGCTGAACCATCTCAAAGACAAGTTATGGCTAGTTCCATTCTAACTGAGGCTAGCATGTATGGCAATGATCGCATTCATGGTGCCCTAGGTCAAGTTCTTACTTTGAACAATCAAATCCAATCTGCTCAAAGTGAATTAGACTTTGTAAACACTATGCTTGCTCAATGCTCACTTCAATCAACTTCACATGTTTCAAACACTCCTCTGGATGATGTTGTGGATGGTTCTTCTCACCCAGGACAATCAAGTACTGTTGCACCTCGTGAGAAAGAGGGTGGGGCTCAAGAGAAAGATGCCGAGTTCAAGAGAAAGAACAAGAAGAAGCATTGA 498 0.4137 MSEEHRHHACVLCRYQHKRHDGSCQFGQYFPSNRAMDFENACRLFGLANLLRLMRSAEPSQRQVMASSILTEASMYGNDRIHGALGQVLTLNNQIQSAQSELDFVNTMLAQCSLQSTSHVSNTPLDDVVDGSSHPGQSSTVAPREKEGGAQEKDAEFKRKNKKKH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00901 165 MobiDBLite consensus disorder prediction 123 140 - -
Vimu5g00901 165 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Vimu5g00901 165 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Vimu5g00901 165 MobiDBLite consensus disorder prediction 123 165 - -
Vimu5g00901 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00901 Vimu-Chr5 12286761 12287782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00901 6 96 AS2 family AT2G19820 38.043 1.88e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu5g00901 LOB 2.3e-21 No_clan