Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00899 ATGTCGGAGAGTGGCAGAAGACACGGCGGAGGCGAACAGCTCCTGGCGGAGGAGGCCTCCGGAGACTTGTCGTCACTGCCGTGGAGACTGAATGTGAAGGAGTTTCAGTTGCCACGCCAAAGTGACAGCCATGAGCACCGTAATAGCCCAACTTACTTCACTTTTCACGGTCTTTTTCGGAAACCCAAAAAGGAACGCAAGGTTGCAGAATACTACAAGAAACAGGAGAAGCTCCTTGAAGGGTATAATGACATGGATTCGATGACTGAAACGGGATATTTCCCTGGAAGTCTCACTGAGGATGAAATGAAGCAATTAGCAAGAAGTGAGAGACTGGCAGTGAATGTGTCCAATGCAGCTAACTTGGTGCTATTTGCAGCAAAGGTTTATACTTCCATTGAGAGCAAATCATTAGCAGTCATTGCTTCCACCATGGATTCTCTCTTAGATCTCTTATCTGGGTTCATATTGTGGTTCACTGCCTATGCCATGAGAAACCCAAACCAGTATCACTACCCCATTGGAAAGAAAAGGATGCAACCTGTGTCTAAGCCTGAAATGGATTCCCAAGAGTTGAAATGGATGATCGGTATTATGGCATCTGTTACTGTAGTGAAGTTCATACTCATGATCTACTGTCGAAGGTTTAAGAACGAAATTGTCAGAGCCTATGCACAAGATCATTTTTTTGATGTTATCACTAACTCAGTTGGATTAGTTGCTGCTGTGCTTGCTGTGAAGTACTCTTGGTGGATTGATCCAATGGGAGCTATTATTATAGCTGTGTACACAATTAGCACATGGGCAAAGACAGTGATTGAGAATGTGTGGTCTCTTATTGGAAGAACAGCACCACCTGATTTTCTGGCAAAGTTGACATATCTGATATGGAATCACCATGAAGAGGTTAAACACATAGACACTGTGAGAGCATACACCTTTGGTGCTCATTACTTTGTTGAAGTGGACATAGTGTTGCCAGAAGACATGCCTCTCAATCAAGCACACAACATTGGTGAGACATTGCAGGAAAAATTGGAACAACTTCCTCAAGTTGAAAGAGCCTTTGTTCACATTGATTTTGAGTTTACTCACAGACCTGAACATAAGATGATGGTATAA 1122 0.4314 MSESGRRHGGGEQLLAEEASGDLSSLPWRLNVKEFQLPRQSDSHEHRNSPTYFTFHGLFRKPKKERKVAEYYKKQEKLLEGYNDMDSMTETGYFPGSLTEDEMKQLARSERLAVNVSNAANLVLFAAKVYTSIESKSLAVIASTMDSLLDLLSGFILWFTAYAMRNPNQYHYPIGKKRMQPVSKPEMDSQELKWMIGIMASVTVVKFILMIYCRRFKNEIVRAYAQDHFFDVITNSVGLVAAVLAVKYSWWIDPMGAIIIAVYTISTWAKTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEEVKHIDTVRAYTFGAHYFVEVDIVLPEDMPLNQAHNIGETLQEKLEQLPQVERAFVHIDFEFTHRPEHKMMV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00899 373 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g00899 373 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 284 360 IPR036837 -
Vimu5g00899 373 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 189 370 - -
Vimu5g00899 373 Pfam Dimerisation domain of Zinc Transporter 286 360 IPR027470 -
Vimu5g00899 373 Gene3D Cation efflux protein transmembrane domain 184 279 IPR027469 -
Vimu5g00899 373 Gene3D Cation efflux protein transmembrane domain 112 183 IPR027469 -
Vimu5g00899 373 Pfam Cation efflux family 117 183 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vimu5g00899 373 Pfam Cation efflux family 189 279 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vimu5g00899 373 SUPERFAMILY Cation efflux protein transmembrane domain-like 109 281 IPR027469 -
Vimu5g00899 373 FunFam Metal tolerance protein 11 282 362 - -
Vimu5g00899 373 Gene3D Cation efflux protein, cytoplasmic domain 284 361 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00899 Vimu-Chr5 12228200 12234448 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00899 5 12228200 12234448 Vimu5g00899 5 12228200 12234448 ECH
Vimu4g01609 4 17256105 17258964 Vimu5g00899 5 12228200 12234448 PCT