Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00896 ATGGTTTCTCTCACGGAAAAATCCAGAGTGGGCTCAACTCGAGCCTCTGTGGTCGCTGCTGCCGCCCAATCTCGCCCAAGCGTGGGTGGTAGGAAATTCAAGGTATTTTCGGAAATTGACCGGACTAAAGCTGGTGATGGGAATACGACTTCTGCCAGAGGAACAGTTGCAAATTCAAGAAGGAGTACCGTGGTGGCTGGCAAAGGGAATATTCTTAACAGTACCAGTAATCAAAAGGGTGGTCTCAAACAGAGTATGGATAAAAGTAGTGGCAAATATGGTACTTCTGTGAGAAAGGCATTGGCTGATGTTAGCAATGTTGAAGAAAAGTTAACAGCAGCTGTTGGGCATGCTAACTCAAAAATGAAGGTTTCAACAGGTTCAAGTACAAAAATAGTGGGTGTATCTTTGAGGAAGTCCATCACGGGAAGAGTGCAAAGAAATAATAGTAAAGCTGATGTTCGGTTAGATGCTCTCAATAAAGATGATCAGAAAAATAATACAAAAGGAGGCCAATCAGTTTTCTACACAAAGGACAGGTTTACATGGAAGACTACAGCTACGAGCACTACAAGGAAGTCTTTACCAGTACCAAGGAGGGTAATCAGAGAAGATACGAGTAAAACAAAGGAAAATGTTAGTTCTCAAACAGCAAAAGGCCAAAGTTGTCTTCCCTCTAAGGCAACAACAAATAGAAGAGATAGCTCCCAACTGGTTAATGCAAGAAGCCATCTATGGAAGAATCGAGTGAGTGATGGTTTTGTTCTGACGGTTCAGCCTAATGTTTCACATGCATCCTTAAGGAAGCCTACCAAGCCAATCGTTAAGACCACACTCAAGGCTTCCATTGCGCAAAGGACTTCAAAATCTAAATCCATATCAGCTCAGAGTAAATTAGAATCAACTATTGCAACGTCATCTCAGAACAAATCCATATCAGCTCAGAACAAATTAGAATCGACTAGTGCAACCTTATCTCAGGAAAAAGAAACAGTTTCTTTGTCTCTTCCTGGGAATAGCTCGACAGTTTCTGATGATGCAAATCAAAGACATCTTCCGTCTGAGAGCACACTAAGAACTGATCTGTCAGAGATTATTCCAAGGAAAAAATCCAGCCGCCGAAAATCATATACAAGTTCATTAATTGAAGGATCTAAGTTTCTCAAGGAAAGTGAAGTTAGAGAGCAAGATAACCTACCCAATATAGATAATGAAACCAATCAATTTGAAGTTTCTGAATACGTTGATGACATATATCAGTACTATTGGGTTACTGAGGCACGTAATCTAGCTCTAGCAAATTACATGTCAATTCAGACTGACATTACACCACATTTGCGGGGCATTTTGATCAACTGGCTAATTGAAGTACACTTCAAATTTGATTTGATGCCAGAAACACTGTATCTCACTGTTACGTTGCTGGATCAATATCTCTCCCTGGTGACTATCAAAAAGACTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCTAGGGTCAAAGATTTAATTAGCATCTCTGCTGGGTATACTAGAGATGAAATGCTTGGAATGGAAAAACTTATTCTTAGAAAATTAAAGTTCCGTCTCAATGCTCCTACTCATTATGTTTTTTTAGTGCGGTTTCTGAAGGCTGGACAATCAAATAAAAAGATTGAACACATGGCATTCTTTCTGGTTGACTTATGCTTAGTTGAATATGACGCTTTAGCATTCAAGCCTTCATTACTTAGTGCATCAGCTCTCTACGTTGCACGGTGTACGTTGCAAATATCTCCACCATGGACCCCATTACTTCACAAGCATGCGCGTTATGAAGTTTCACAGCTCAGGCATTTACTCAAACTTTTTCTATCACTTTTAAAGTTTGGGATGAATTCCATTTATGCTGACTGTAACATTTGTAGGGATTGTGCGGAAATGATACTCAAGTTCCACAAAGCTGCTGGGGTTGGAAAGTTGACAGTTGCATACGAAAAGTACTCTAGACCAGAACTCGGTAAGGTTGCAGCAGTGAAACCTTTGGACGTACTTCCCCTGTGA 2076 0.4037 MVSLTEKSRVGSTRASVVAAAAQSRPSVGGRKFKVFSEIDRTKAGDGNTTSARGTVANSRRSTVVAGKGNILNSTSNQKGGLKQSMDKSSGKYGTSVRKALADVSNVEEKLTAAVGHANSKMKVSTGSSTKIVGVSLRKSITGRVQRNNSKADVRLDALNKDDQKNNTKGGQSVFYTKDRFTWKTTATSTTRKSLPVPRRVIREDTSKTKENVSSQTAKGQSCLPSKATTNRRDSSQLVNARSHLWKNRVSDGFVLTVQPNVSHASLRKPTKPIVKTTLKASIAQRTSKSKSISAQSKLESTIATSSQNKSISAQNKLESTSATLSQEKETVSLSLPGNSSTVSDDANQRHLPSESTLRTDLSEIIPRKKSSRRKSYTSSLIEGSKFLKESEVREQDNLPNIDNETNQFEVSEYVDDIYQYYWVTEARNLALANYMSIQTDITPHLRGILINWLIEVHFKFDLMPETLYLTVTLLDQYLSLVTIKKTDMQLVGLTALLLASKYEDFWHPRVKDLISISAGYTRDEMLGMEKLILRKLKFRLNAPTHYVFLVRFLKAGQSNKKIEHMAFFLVDLCLVEYDALAFKPSLLSASALYVARCTLQISPPWTPLLHKHARYEVSQLRHLLKLFLSLLKFGMNSIYADCNICRDCAEMILKFHKAAGVGKLTVAYEKYSRPELGKVAAVKPLDVLPL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00896 691 MobiDBLite consensus disorder prediction 73 94 - -
Vimu5g00896 691 SMART Cyclin_C_2 544 686 IPR004367 -
Vimu5g00896 691 MobiDBLite consensus disorder prediction 73 92 - -
Vimu5g00896 691 Gene3D - 432 536 - -
Vimu5g00896 691 Gene3D - 537 689 - -
Vimu5g00896 691 SUPERFAMILY Cyclin-like 544 688 IPR036915 -
Vimu5g00896 691 FunFam Cyclin N-terminal domain containing 2 432 542 - -
Vimu5g00896 691 SUPERFAMILY Cyclin-like 407 542 IPR036915 -
Vimu5g00896 691 Pfam Cyclin, C-terminal domain 544 632 IPR004367 -
Vimu5g00896 691 CDD CYCLIN_CCNB1-like_rpt1 411 539 - -
Vimu5g00896 691 MobiDBLite consensus disorder prediction 202 237 - -
Vimu5g00896 691 MobiDBLite consensus disorder prediction 285 361 - -
Vimu5g00896 691 Pfam Cyclin, N-terminal domain 417 542 IPR006671 -
Vimu5g00896 691 MobiDBLite consensus disorder prediction 285 371 - -
Vimu5g00896 691 MobiDBLite consensus disorder prediction 211 237 - -
Vimu5g00896 691 PANTHER CYCLINS 367 672 IPR039361 -
Vimu5g00896 691 SMART cyclin_7 452 535 IPR013763 -
Vimu5g00896 691 SMART cyclin_7 548 630 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00896 Vimu-Chr5 12184739 12194459 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00896 5 12184739 12194459 Vimu5g00896 5 12184739 12194459 ECH