Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00880 ATGCGAAAAGCTTGTGATTTGGTGTTGCAGATTGTTAGAGAGAAGTCTGGTTTACTTCATGATGATACCTTAACCAAACTCGCCCTCTCCCTTGCTAGGTTGCAAATGCCATCCCCTGCCTCAGTGATACTTAGGTTGATGCTTGACAAAGGGTGTGTGCCCTCTATGCATTTATTGTCCTTGGTTGTTTTTCATATTGTGAAGTCAGAAATTGGAACACATCTTTCATCCAATTACCTGTTTCAAGTTTGTGATCTTTACAATTGCTTGAATGATAAGAAGGTTCACCATGCAGTCACAGTCAAGCTGGATACATTGGTCTTTAACCTTGTTCTTGATGCTTGTGTGAAGTTTAAATTGTCTTTAAAAGGCCTGAGACTGATTGAATTAATGTCGCTGACTGGGACCATGGCTGACGCACACTCCATTGTAATAATTTCACAGATTCTAGAGATGAATGGTCTGAGAGATGAAATGCAGGAACTGAAAGATCATATTGACAGAGTTTCAGCTGCTTATGTTTGTCACTATTGTCAGTTCTATGATAGTTTGCTGAGCTTGCACTTCAAATTTAATGACATTGATGCTGCAGCTAAGCTTGTTCTGGATATGACTAGCTCACATAATTGTAATGTTAAGAAAGAATATGGGAAACACTTGCAGAATCCTTGTTTTATTTCCATTGGATCTCCTAACCTTAGGAGTGCATTGAAGATACACATTGAACCTGAGCAAATGTGTAAGGATTTTGTCCTTAAAGTTGAAAGCAGACAGGTTTTAATCTTCTATAGGGGTGGGAAACTAGTTCTTAGTAATAGAGCTTTGGCTAAGTTCATCAGTGGTTACAACAAAGATGGGAGGATTGGTGAACTTTCAAAACTCTTACTTACTATTCAAGGGGAATTATGTTCAGTGGCAGGCTCCAGTTTGTGTTTTGATGTAATCAGTTCTTGTATTCAATTAGGATGGCTTGAGTGTGCTCATGACATTTTGGATGATATAGAGGTTACTGGTTCTCCAATGGGTCAGGATATGTATCTGTTACTTGTGTCGGCATACCAGAAGCGGGGATTGCAAAGAGAAGCAAAGGCACTACTGAAACAAATGAAAAAAGTTGTTTTGTTGAACAAAGGGTTATCTGATGATGCTACGGGCAAACACAACCTCTGTGAAAAAACTTTAAATTCACCTGGTAAAACAGATTTGGCCATTGCCTTAGCTCAAATATTGGAAGATGAAGATCATACAATTTTTCCTTTGCTGTATAAGTTCAATTCTTCCATTTTCTTTTTCTGCAAGGCCAGAATGATAGAGGATGCATTAAAGGCATATAGAAGAATGCTTAGCATGAATGTTCAGCCCACAAATCAAACTTTTTCCTTTTTAATGTGTGGATATTCTTCTTTTGGTATGTATCGTGAGATCACAATCTTGTGGGGAGACATTAAGAGATTCATGAAGAGTGACAATTTAGTGGGAAATAGTGATCTCTATGAGTTACTATTGCTAAACTTTCTTCGAGGTGGTTACTTTGAGAGAGTGATGGAGGTCATTAGCCATATGAGAGAACATAACATGTATGCTGACAAGTGGATTTACAAAATTGAGTTCCTTAGACTTCATAAAAATCTTTATAGGAGTTTAAAAGCATCAAATACAAGAACAGAAGCACAAAGCAAACGGCTTGAGCATGTTCAGGAGTTTAGGAAATGGGTGGGTATTGATTAA 1728 0.3785 MRKACDLVLQIVREKSGLLHDDTLTKLALSLARLQMPSPASVILRLMLDKGCVPSMHLLSLVVFHIVKSEIGTHLSSNYLFQVCDLYNCLNDKKVHHAVTVKLDTLVFNLVLDACVKFKLSLKGLRLIELMSLTGTMADAHSIVIISQILEMNGLRDEMQELKDHIDRVSAAYVCHYCQFYDSLLSLHFKFNDIDAAAKLVLDMTSSHNCNVKKEYGKHLQNPCFISIGSPNLRSALKIHIEPEQMCKDFVLKVESRQVLIFYRGGKLVLSNRALAKFISGYNKDGRIGELSKLLLTIQGELCSVAGSSLCFDVISSCIQLGWLECAHDILDDIEVTGSPMGQDMYLLLVSAYQKRGLQREAKALLKQMKKVVLLNKGLSDDATGKHNLCEKTLNSPGKTDLAIALAQILEDEDHTIFPLLYKFNSSIFFFCKARMIEDALKAYRRMLSMNVQPTNQTFSFLMCGYSSFGMYREITILWGDIKRFMKSDNLVGNSDLYELLLLNFLRGGYFERVMEVISHMREHNMYADKWIYKIEFLRLHKNLYRSLKASNTRTEAQSKRLEHVQEFRKWVGID 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00880 575 Gene3D Tetratricopeptide repeat domain 30 249 IPR011990 GO:0005515
Vimu5g00880 575 Gene3D Tetratricopeptide repeat domain 388 574 IPR011990 GO:0005515
Vimu5g00880 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vimu5g00880 575 Gene3D Tetratricopeptide repeat domain 262 383 IPR011990 GO:0005515
Vimu5g00880 575 PANTHER BNAC05G43320D PROTEIN 2 373 - -
Vimu5g00880 575 Pfam PPR repeat 431 452 IPR002885 -
Vimu5g00880 575 Coils Coil 152 172 - -
Vimu5g00880 575 NCBIfam pentatricopeptide repeat 431 455 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00880 Vimu-Chr5 11656458 11660528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00880 314 533 Glycosyltransferase AT1G05670 25.000 2.99e-08 54.7