Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00854 ATGTGCAGCTCCAAGACCAAAGTGACTGTAGGTATAGAAGCCACAGCCACATACCCTTTGGCCAGAATCAATGGCAGGCCAGTTCTTCAACCTACTTGTAACAGAGTTCCTAACCTTGTGAGGAGAAATTCAATCAAGAAAGTGTCACCAAAATCACCTTCTCCACCTTCACCACCACTTCCAACCAAGACCTCACTGACACCTCCTGTTTCTCCAAAGTCCAAGTCCCCTAGGCCTCCAGCTATAAAGAGAGGCAGTGATAGTAATGGACTGAACTCAAGTTCTGAGAAGATTGTTACCCCAAGACACACCATCAAAACTCCAACTCTAGAGAGGAAAAAGTGTAAGAGTTTTAAGGAAGGATCCTGTGGCACTTCAGCTTCTTCTGCCTCCATAGAGGCATCGTTGAGCTACTCTTCCACTCTGATCACTGAATCCCCAGGAAGCATAGCTGCAGTGAGGAGGGAACAGATGGCACTGCAGCATGCACAGAGAAAAATGAAGATTGCCCATTATGGAAGATCAAAGTCTGCAAAGTTTGAAAGAGTTGTTCCTCTTGATCCTTCAACCAATCTTACTTCAAAGACAAGTGAGGAGGAGAAGAGATGCAGCTTTATCACAGCTAATTCAGATCCCATCTATATTGCTTATCATGATGAAGAATGGGGAGTTCCGGTTCATGATGACAAGATGTTGTTTGAACTTCTAGTTTTAAGTGGTGCTCAGGTTGGATCAGATTGGACCTCAATCTTGAAGAAACGCCAGGATTTCAGGACTGCATTTTCAGAATTTGATGCAGCAACCTTGGCCAACATGACTGATAAGCAAATGGTATCTATTAGTTTGGAATATGGCATTGATATCAGCAGAGTTCGAGGTGTTGTTGACAATGCTAACAGAATTTTAGAGATTAACAAGGAGTTTGGATCATTTGACAAGTACATTTGGGGTTTTGTGAATCACAAGCCCATCTCCACACAATACAAGTTCGGCCACAAGATTCCAGTGAAGACATCAAAATCAGAAAGCATAAGCAAAGACATGATCAGGAGAGGCTTTAGGTTTGTAGGTCCAACAGTGCTTCACTCATTTATGCAAGCAGCTGGACTCACCAATGATCACTTAATCACTTGCCATAGACACTTGCAATGCACCAGAGAGTCCTCCCTATAG 1173 0.4331 MCSSKTKVTVGIEATATYPLARINGRPVLQPTCNRVPNLVRRNSIKKVSPKSPSPPSPPLPTKTSLTPPVSPKSKSPRPPAIKRGSDSNGLNSSSEKIVTPRHTIKTPTLERKKCKSFKEGSCGTSASSASIEASLSYSSTLITESPGSIAAVRREQMALQHAQRKMKIAHYGRSKSAKFERVVPLDPSTNLTSKTSEEEKRCSFITANSDPIYIAYHDEEWGVPVHDDKMLFELLVLSGAQVGSDWTSILKKRQDFRTAFSEFDAATLANMTDKQMVSISLEYGIDISRVRGVVDNANRILEINKEFGSFDKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMIRRGFRFVGPTVLHSFMQAAGLTNDHLITCHRHLQCTRESSL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00854 390 MobiDBLite consensus disorder prediction 28 126 - -
Vimu5g00854 390 Gene3D Hypothetical protein; domain 2 200 382 - -
Vimu5g00854 390 MobiDBLite consensus disorder prediction 51 76 - -
Vimu5g00854 390 SUPERFAMILY DNA-glycosylase 201 384 IPR011257 GO:0003824|GO:0006281
Vimu5g00854 390 MobiDBLite consensus disorder prediction 86 102 - -
Vimu5g00854 390 Pfam Methyladenine glycosylase 208 381 IPR005019 GO:0006284|GO:0008725
Vimu5g00854 390 PANTHER OS04G0501200 PROTEIN 21 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00854 Vimu-Chr5 11172374 11174715 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00854 5 11172374 11174715 Vimu5g00854 5 11172374 11174715 ECH
Vimu4g01574 4 16773641 16776107 Vimu5g00854 5 11172374 11174715 PCT