Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00834 ATGTTGATCAGCGTCAACGTTCTTTGGTCGCTGATTAGGAGTTCGCACTTGAAGAGGCAGGAAAAAAGCGATGCCCACGTCGACGAAGATAGAAGCAAAAAGAGCCCATGTTTGGACAAACATGTTCTGCTGTTTCCACCTGCCTCTGAATCAACTAGCGCTATAGGGGCATGGGAGCATTTTAAAGTGGGTCTATTTCACGAAATTGATCACACCAGGCTCTCACCAATATCCCCAGTGCAACTAAAATCTGTTCGCATTGTAATGGTCAGTGACATAGGGGAGCACCTGGTGTCGCTAAGGTACCCAAGCCTCCAATCACTTCGCATGCACTTCAGCGACCAAAACTTTGGGAAACAAGACGGGAAGACGATCCCTGCGCTCGACGAGAAATACGTGATGGGGATGGACTTCGCCATCAAAGCGCTTTCCAGGAGCATCCCAACTGAGGAATTTGCACAAAGAAGAAACTCTTGGAGCTTCTGGGTCTCTCATTCTAAAGAAAACACCCAAGACCCCGAGAATCCAGCTCTCACTGATGCCGCAAGGAGCCTCATTTCCAAGCAGGGTTCTTGCTGGACTCAGCTCAAGTTCACAGGGATGATGCAGTGGGGGAAACGCCGGCAAGTTCGGTTCTTGGGCCGCCATGAAGAGGCAAAGGTTCAATCTTTACCGGAACCGCGTAAGGGAAAGATGGCCAGCGTTGAACTCAGAGAAGGAACTAGTGAGAAGAAAAGGAAGAAAGGGGAAGAGGAAATGGAGGCTACCAAGGAAGAGTCTTTCGGGCATATGAGGATGACGCGTCAATGTAGGCAAAGTCATCAAAACGTGAGTAGCAGTGGAGATAAAAAATCTAAGAAAGCAAAGAATGACCCCAAGAAGCAACAACTTGTGCTTTACAACAAAAACAAGCGGAAAATCTCTATTGGAAGATGGTCTGCTGAGAGGTATATGATGGCAGAGGAGAACATGTTAAAGGTTATGAAAGAAAAAAGAGCTGTGTATGGGAACCCAATATTGAGGCCAGATTTGAGATCAGAAGCACGAAAGTATATTGGTGATACGGGTCTGCTCGATCATTTGCTGAAGCACATGGCTGGAAAAGTGGCACCAGGAGGAGCTGAGAGATTCCGAAGGCGTCACAATGCCGAGGGCGCAATGGAATACTGGTTAGAGAGCGCTGATCTGGTTGAAATGAGGAAGGAAGCAGGGGTACAAGACCCTTATTGGACTCCTTCCCCAGGATGGAAGCTTGGGGACAGCATTTCACAAGATTACGTTACTGGTAGTGAACTAAGAGAGATCAAAGAAGAAATACTCAAGTTGAAACAAGATATGCGAGAGCTCGCAATGAAGAAGGGAGAGGAGGTATTGGCCATTGAGACTACTCCTAGCTCATGTTTGTCTAGTCTGAATTCTGAAGACTATGGTTCCTTCGCTCCAAAGGAGGAGATTTATGCGGAGTTGGTGAGTAAGAAGGCTAAAATAGAGGAACAATTGAAGGAAATTTCAGTGACTCTGAGTTGTATGGAGGAGAAACTTAGAATGCTAAAACCAACAATGGTGGAGGAACAGATAATGTCAGAATCGGAAACACCCCAAGCCTTTTCTCCAGGACCAACATCAGTAAACATAGGAGGGGAGACAAGGAAGGAAAAGAAAAGCTACAAGAACAAAGCAACAAACTCAGCGGATACACAGATGCAGAAAAACAACAGTGCAGCAGAGAACAAGACGGCAAGGATTGAAAGGCTGAAAAGTGGCTTTCAGATTTGCAAGCCTCAAGGAACCTTTGTGTGGCCAAATATAGGTTTGTCTCCCCATGTTGTGGCTAACCATGATGAGCAAACAGTGGTTCCTACGCCACCATCAGCTTCCTCTTCTACCACCTCAGCCTCAAAGCTCATTTTCAAACCCCAGCCTCAGCACCTACCATTACAAGTCCTAACCCGTCCTTCTTCCCCAGTGAAGCCACTTGCAGAGAGGCGCCCTGTGAGCACAGCTACTTTGACCCATGTTACTGGCCCATTCTCCCCTCATCTTTCTCCTCCATCAGGTACTCCATTATCCAAAATCACCACCACCATCACTATTAACCTCAATGAGGCCCCTCTCACCCTAGACTAA 2127 0.4701 MLISVNVLWSLIRSSHLKRQEKSDAHVDEDRSKKSPCLDKHVLLFPPASESTSAIGAWEHFKVGLFHEIDHTRLSPISPVQLKSVRIVMVSDIGEHLVSLRYPSLQSLRMHFSDQNFGKQDGKTIPALDEKYVMGMDFAIKALSRSIPTEEFAQRRNSWSFWVSHSKENTQDPENPALTDAARSLISKQGSCWTQLKFTGMMQWGKRRQVRFLGRHEEAKVQSLPEPRKGKMASVELREGTSEKKRKKGEEEMEATKEESFGHMRMTRQCRQSHQNVSSSGDKKSKKAKNDPKKQQLVLYNKNKRKISIGRWSAERYMMAEENMLKVMKEKRAVYGNPILRPDLRSEARKYIGDTGLLDHLLKHMAGKVAPGGAERFRRRHNAEGAMEYWLESADLVEMRKEAGVQDPYWTPSPGWKLGDSISQDYVTGSELREIKEEILKLKQDMRELAMKKGEEVLAIETTPSSCLSSLNSEDYGSFAPKEEIYAELVSKKAKIEEQLKEISVTLSCMEEKLRMLKPTMVEEQIMSESETPQAFSPGPTSVNIGGETRKEKKSYKNKATNSADTQMQKNNSAAENKTARIERLKSGFQICKPQGTFVWPNIGLSPHVVANHDEQTVVPTPPSASSSTTSASKLIFKPQPQHLPLQVLTRPSSPVKPLAERRPVSTATLTHVTGPFSPHLSPPSGTPLSKITTTITINLNEAPLTLD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00834 708 MobiDBLite consensus disorder prediction 529 578 - -
Vimu5g00834 708 MobiDBLite consensus disorder prediction 218 265 - -
Vimu5g00834 708 MobiDBLite consensus disorder prediction 218 297 - -
Vimu5g00834 708 MobiDBLite consensus disorder prediction 560 576 - -
Vimu5g00834 708 PANTHER PROTEIN DYAD 59 674 IPR044221 GO:0007131|GO:0051177|GO:0051321
Vimu5g00834 708 Coils Coil 432 452 - -
Vimu5g00834 708 Coils Coil 482 513 - -
Vimu5g00834 708 MobiDBLite consensus disorder prediction 529 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00834 Vimu-Chr5 10797972 10802205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00834 311 392 PHD Transcription Factor Family AT5G22260 43.529 3.86e-06 48.5