Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00832 ATGCCATTTTGCAGTGGTCAAAAGTTTTTCAAGAGGTTCTGTGTTGACGAGTTTCAAATGGCAAGTCTTCCTTATAGCAGCTTTCTTTCTAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGGCTTAGAAGATGCACAGTTTCCCCTTTTGATACTCGTTACAGGGCCTGGGAGATGCTGTTGATTGTCTTTGTTGTTTACTCTGCATGGATTTGCCCCTTTGAGTTTGCATTTCTCCATCAAAAGCATGACACACTGTTCATCATAGACAACATTGTCAATGCTTTCTTTGCCATTGACATCGTTCTCACATTCTTTGTTGCATATCTCGATCACCATTCCTACCTTCTTGTTGATAATCCAAAGAAAATTGCAATAAGGTACTTATCTACTTGGTTCATCTTTGACGTGTGTTCAACTGCACCATTTGAATCCATCAGCCTCCTATTCACTGATCACAGAAGTGAAATTGGGTTTAAAATTCTGAACATGCTTCGGTTATGGCGCCTGAGACGTGTTAGCTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACCAGGTGCTTCAAGCTCATTGCTGTAACATTGTTTGTGGTGCACTTTGCTGGATGCTTTAACTATCTGATAGCTGATAGGTACTCTGATCCGAAAAGAACATGGATTGGTTCTGTGTTCCCAAATTTCAAAGAAGAGAGTCTGTGGGACAGATACGTGACTTCGATGTATTGGTCCATTGTGACACTTACTACCACTGGCTATGGAGACTTGCATGCTACAAACACAAGAGAGATGCTCTTTTTCATCTTCTACATTTTGTTCAACTTGGGATTAACTTCATACATCATCGGAAACATGACAAACCTCGTTGTTCATTGGACAAGCCGAACCAGAAACTTTAGGGATACGGTGAGAGCAGCTTCAGAATTTGCATCGAGAAACCATCTGCCACATCACATACAGGAACAGATGTTGTCACACTTGTGTTTGAAATTCAAGACAGAAGGAGTGAAGCAGCAAGAGACACTGAATGGCCTGCCAAAGGCAATTCGTGCAAGCATTGCACACCATCTGTTTTTCTCTCTTCTGCAGAGACTATACCTCTTCCAAGGAGTATCAGATGATTTTCTTTTCCAACTGGTTACTGAGATGGAAGCTTTGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCCACAGACCTCTACATACTGGTTTCAGGGGCAGTGGATATGATTCGTTATGTTGATAGCAATGAGAAAATTCTGAAGAAGGCTATTGCAGAGGACATATTTGGGGAGATTGGAGTGTTGTACTGTAGACCACAGCCTTTCACTGTTCGGACCACTGAGCTTTCTCAGATTTTAAGACTCAGCAGAACTTCCTTAATGAACTCCTTACATGGATATCCAGAAGCTGCACAGATCATAATGAAAAATCTCTTCATGAGGATAAAGGGGCATGAAGGTTTGGATTTTGAATGTTCACCAAGGGAACCCCAAATGCATGAAATGGATAACACAGAAACAAGTGTTCCTGATTCATCTGCAAGTAATTCTCATAAGGAAACCAGATTGCATATTCCTGAGGATGGAAAAGGAGATTTTGATGCTACTTTCCGTAAAGATCATGCTCAAATGGAAGAAAATGAGAAGAACCAAGGCCCTATAAGATGGAAACAGAAGTCTCTTATAGATCAACAACAAAACAAGAGCCTTTCTGACCTTGCAGTGAACCATGAAAATAGGAAGATAGTAGATGAACATATTATAAACTTTTTGGAGCCAGAAATCCCTTTCAATTACCCTTTAGGAAAAATATACTCAAACTCCTATTCAAGTGCTTCTAACCACAAAACTCAGAGAGAAACAGAAAGATTCTCCAAAAAGAGAGTTGTCATCCACTTTCTAAGCAAACACAAAACCAGCTTACAGGAACATGGCAAGTTGATAATGCTGCCTGATTCATTACAAGAGCTGCTCCACATTGCAGGAGAAAAATTTGGAGTCTCCAAGCTTACAAAAGTAATTACCATAGAGAATGCAGAGATAGATGATATCAGTGTCATTCGAGATGGGGATCATCTATTTTTTGTTTGCAGTGACACTGAAAATTGA 2154 0.4034 MPFCSGQKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRCTVSPFDTRYRAWEMLLIVFVVYSAWICPFEFAFLHQKHDTLFIIDNIVNAFFAIDIVLTFFVAYLDHHSYLLVDNPKKIAIRYLSTWFIFDVCSTAPFESISLLFTDHRSEIGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCFKLIAVTLFVVHFAGCFNYLIADRYSDPKRTWIGSVFPNFKEESLWDRYVTSMYWSIVTLTTTGYGDLHATNTREMLFFIFYILFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQEQMLSHLCLKFKTEGVKQQETLNGLPKAIRASIAHHLFFSLLQRLYLFQGVSDDFLFQLVTEMEALYFPPKEDVILQNESPTDLYILVSGAVDMIRYVDSNEKILKKAIAEDIFGEIGVLYCRPQPFTVRTTELSQILRLSRTSLMNSLHGYPEAAQIIMKNLFMRIKGHEGLDFECSPREPQMHEMDNTETSVPDSSASNSHKETRLHIPEDGKGDFDATFRKDHAQMEENEKNQGPIRWKQKSLIDQQQNKSLSDLAVNHENRKIVDEHIINFLEPEIPFNYPLGKIYSNSYSSASNHKTQRETERFSKKRVVIHFLSKHKTSLQEHGKLIMLPDSLQELLHIAGEKFGVSKLTKVITIENAEIDDISVIRDGDHLFFVCSDTEN 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00832 717 Gene3D Helix hairpin bin 301 363 - -
Vimu5g00832 717 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Vimu5g00832 717 Pfam KHA, dimerisation domain of potassium ion channel 642 710 IPR021789 -
Vimu5g00832 717 Pfam Cyclic nucleotide-binding domain 397 477 IPR000595 -
Vimu5g00832 717 PANTHER POTASSIUM CHANNEL AKT1 26 500 IPR045319 GO:0005249|GO:0006813
Vimu5g00832 717 FunFam Potassium channel KAT2 365 501 - -
Vimu5g00832 717 ProSiteProfiles KHA domain profile. 643 717 IPR021789 -
Vimu5g00832 717 MobiDBLite consensus disorder prediction 512 547 - -
Vimu5g00832 717 Gene3D Jelly Rolls 364 498 IPR014710 -
Vimu5g00832 717 CDD CAP_ED 377 490 IPR000595 -
Vimu5g00832 717 Gene3D - 60 300 - -
Vimu5g00832 717 MobiDBLite consensus disorder prediction 532 547 - -
Vimu5g00832 717 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Vimu5g00832 717 FunFam Potassium channel KAT3 61 301 - -
Vimu5g00832 717 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu5g00832 717 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu5g00832 717 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu5g00832 717 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu5g00832 717 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu5g00832 717 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu5g00832 717 SUPERFAMILY cAMP-binding domain-like 304 496 IPR018490 -
Vimu5g00832 717 SMART cnmp_10 377 494 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00832 Vimu-Chr5 10685994 10691543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00832 7 710 Ion Channels AT5G46240 58.996 0.0 847
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00832 5 10685994 10691543 Vimu5g00832 5 10685994 10691543 ECH