Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00767 | ATGGCAGTTTCTGAGAGAGTGTCAGCTGAGCGTGGAGAGCCTCTTGGTGAAACAGTGGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTTCTATTTTGCACCAGTGGTATATTACTTAGAAGGTTGCTGAGTGATCGTAATCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGAATGAATGAAGACTTCTTATTGATTGTGCTAAAGGATCTGCTTCCACGGCGTAGGGATTTAAGGTTGGTTTTAATGAGTGCCACCTTGAATGCCGAGCTATTTTCAAATTATTTTGGAGGTGCTCCTACATTTCGAATTCCGGGTTTCACCTATCCTGTTAGAGCTCACTTTTTAGAAGATGTGTTGGAAATGACTGGATACAAGTTGACTTCCTTCAACCAAATTGATGATTATGGTCAAGAGAAACTGTGGAAAACACAAAAGCAATTAGCACCACGGAAGAGGAAAAATCAGATCACTTCTCTTGTTGAGGATGCTCTTTCAAAATCAAGCTTTGAGAACTACAGCTCCAGGGCACGTGATTCAGTGGCATCTTGGGCACCTGACTGCATAGGGTTCAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGTCCAGGTGCTGTCTTAGTGTTTATGACCGGATGGGAGGATATAAGTTCTCTAAGAGATCAACTTAAAGCACATCCTCTTTTAGGAGATCCTAATAGGATTCTACTTCTAACGTGTCATGGTTCAATGGCAACTTCAGAACAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTAATACTTGCTACAAATATGGCTGAGGCAAGTATAACAATCAATGACATAGTTTTTGTGGTCGATTGTGGAAAAGCAAAAGAGACCACGTATGATGCTTTGAATAACACACCTTGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGAGAAGGGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACACCTTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATTGGAGAGTTCTTATCAGCAGCTTTACAGGCACCGGAGCCACGAGCTGTTCAAAATGCTATTGACTTTCTGAAGATGATTGGAGCACTAGATGAAAAAGAAAATCTTACAAATCTCGGGAGTTTTCTCTCTATACTTCCTGTAGATCCCAAGCTGGGCAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAATTGTAGCTGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGACAAAAGGGATGTAAGTTAG | 1416 | 0.4124 | MAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFRIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKRKNQITSLVEDALSKSSFENYSSRARDSVASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDFLKMIGALDEKENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDVS | 471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00767 | 471 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 203 | 469 | IPR027417 | - | |
| Vimu5g00767 | 471 | SMART | helicmild6 | 231 | 337 | IPR001650 | - | |
| Vimu5g00767 | 471 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 203 | 377 | IPR001650 | - | |
| Vimu5g00767 | 471 | FunFam | Putative ATP-dependent RNA helicase DHX36 | 379 | 471 | - | - | |
| Vimu5g00767 | 471 | Pfam | Helicase associated domain (HA2) | 400 | 468 | IPR007502 | GO:0004386 | |
| Vimu5g00767 | 471 | Gene3D | - | 201 | 356 | IPR027417 | - | |
| Vimu5g00767 | 471 | Gene3D | - | 379 | 471 | - | - | |
| Vimu5g00767 | 471 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 97 | IPR027417 | - | |
| Vimu5g00767 | 471 | PANTHER | ATP-DEPENDENT RNA HELICASE | 1 | 468 | - | - | |
| Vimu5g00767 | 471 | Pfam | Helicase conserved C-terminal domain | 206 | 336 | IPR001650 | - | |
| Vimu5g00767 | 471 | SMART | ha2_5 | 399 | 470 | IPR007502 | GO:0004386 | |
| Vimu5g00767 | 471 | FunFam | DExH-box ATP-dependent RNA helicase DExH3 | 199 | 355 | - | - | |
| Vimu5g00767 | 471 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 115 | IPR014001 | - | |
| Vimu5g00767 | 471 | CDD | DEXHc_RHA-like | 1 | 114 | - | - | |
| Vimu5g00767 | 471 | CDD | SF2_C_RHA | 191 | 345 | - | - | |
| Vimu5g00767 | 471 | Gene3D | - | 1 | 116 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g00767 | Vimu-Chr5 | 9483849 | 9496635 | Transposed |