Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00572 ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGATCGTCCGAGGTGGGGTTGTCGTTAACAGCGTTTGGTTCTTTGCTGCTGCAGCTGGCGATTGCGTTCTGATGCGGCCCTCGGACACTTCGAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAAGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGGGGTCGAAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCTCACACCATCGAAGGCAAGTGCTTAGTGCACTCCTTCAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAAGCCGCAACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTCTGTTCGGAATGTTCATCTGATGATGATATGAAGAAACCACAAGCTACATTTTCTGCATCACCTGGAGCTGATGGCAAGGTGACTTTTTACATCCATTACCAAATAATTACTACTATGTGGATTCGAAGCGGCGGAAGAGATGACCATGATGGTGAAGAAGGGAAGACTGTGATAGCTTTTGTGTGGCTCAATGGTAGCTATAAACATTTTACTATGATAACTCCCATCCAACTGTTTATTCCTTAG 765 0.4771 MAKTRPGRKDLDSYTIRGTNKIVRGGVVVNSVWFFAAAAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCLVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASPGADGKVTFYIHYQIITTMWIRSGGRDDHDGEEGKTVIAFVWLNGSYKHFTMITPIQLFIP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00572 254 PANTHER OS08G0421900 PROTEIN 154 199 - -
Vimu5g00572 254 ProSiteProfiles BAH domain profile. 35 150 IPR001025 GO:0003682
Vimu5g00572 254 Pfam BAH domain 38 149 IPR001025 GO:0003682
Vimu5g00572 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 192 IPR013083 -
Vimu5g00572 254 Gene3D - 21 151 IPR043151 -
Vimu5g00572 254 SUPERFAMILY FYVE/PHD zinc finger 153 181 IPR011011 -
Vimu5g00572 254 SMART BAH_4 38 150 IPR001025 GO:0003682
Vimu5g00572 254 FunFam Chromatin remodeling protein EBS 1 146 - -
Vimu5g00572 254 CDD BAH_BAHCC1 40 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00572 Vimu-Chr5 6140278 6144400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00572 45 152 Core DNA Replication Machinery Family AT4G14700 30.275 6.03e-10 57.4