Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00566 | ATGGACCAGAACATCGCAGTTCCAAGAATTCATGCATTCTCATCACCACCTTCTCCTCCCTTGTTTTCCTGCATCATTGCCCTTTCCATCGCAACACTGATTTTCATGTTCTTCTACTTTTTCTCACCCATTGTTTCAGCAGCCATTCTTCTAGCCCTTTGCTTCATCAGCCTCTTCTTTTGCACCTTCGAGCATAATCAAACATTTTCCTTTCAGGCACACACTCCACCCAAAAACCAGAGGCTGGTCAAAATTTTCAATAACCTGTTCTGGGTCGTTGAAGAGAAAAGAAACGGCCAAACGCAACAAGTAAAGAAGCTGCTTGGATCCATCGTATGCTTCGAAAACCAAGCATTTCTGTCAGGGAGTGAATGTGCAATTTGTTTAGAAGAGTTGAAGAATGGAGAAGAGTGTGTTGTGTTTTCAGTTTGTGGGCACATTTTTCATTGTGATTGTATCAAACACTGGTTAGAGGAAAAACTGACTTGTCCAAATTGTCGTCACTGTGTGGCATATCAGCCACCATGTTGA | 531 | 0.4237 | MDQNIAVPRIHAFSSPPSPPLFSCIIALSIATLIFMFFYFFSPIVSAAILLALCFISLFFCTFEHNQTFSFQAHTPPKNQRLVKIFNNLFWVVEEKRNGQTQQVKKLLGSIVCFENQAFLSGSECAICLEELKNGEECVVFSVCGHIFHCDCIKHWLEEKLTCPNCRHCVAYQPPC | 176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00566 | 176 | SUPERFAMILY | RING/U-box | 114 | 173 | - | - | |
| Vimu5g00566 | 176 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 171 | IPR013083 | - | |
| Vimu5g00566 | 176 | PANTHER | RING FINGER DOMAIN-CONTAINING | 30 | 170 | - | - | |
| Vimu5g00566 | 176 | SMART | ring_2 | 125 | 166 | IPR001841 | - | |
| Vimu5g00566 | 176 | Pfam | Ring finger domain | 124 | 167 | IPR001841 | - | |
| Vimu5g00566 | 176 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 167 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g00566 | Vimu-Chr5 | 6083208 | 6084497 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00566 | 31 | 167 | C3H Transcription Factor Family | AT5G41450 | 29.286 | 3.16e-13 | 62.4 |