Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00562 ATGAGTCTTGGAATACCTCACAGGCCACCTCCTTACAACTTGAATGATTTGTTAACTTCTTCTGCTCGTGCACCAGCACATTCTGGCCACCAACTTCGTCCAAGTTATTTCCAATCACAGCCAAGACCATTTCATTATCAGCAGTACTTCCCTCACCTCTATGAAAGCTATGGCACCAATGGATTGCCGTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAATCCTATGATTGGTATGTTTGGTGAGATGGTCTTGACAAGAATTTTTGGGGTCTCAGATGCAAACTTGTTTTCATACCCTCATAATGGAAATGGCAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAAGTCTCTGAACAGACTTTCCATCTTTCTCCTATGTTCTATCATTACAAATGGTGTTGAGGCTGCGGGGCCTACTGAACGAAGATCAGATACTTTTTCGTTGATTGGTGATCAGTTGGATCTTGGGTCGATAATGATGAACAATGATTGCCTTCGCAATGACAAAGAAACTGAAGAAAACAATTCGGCAAATAAACCATTTGATTCCAAAAGGAACAGTCCTTTGGAAAGAAAGCTTGATGAGGATATTTTGAGCTCTCAGGAGAGGAGGGTCAGGGATTGGCACTTCACTGACTTGGAGAATGATTGTGCTGCTTCACTGAATGATGTTTCTTTTTCCTACTGGAATCACGATAAAGTGTATAGGAGTTTTGGAGGAGATCATTGTATGATTAAAAGGGGTCACAATTTCGTTGTTGAGTATCTGGGAGAAGGAATCACAATTCCCTTGAACCACTTTGTAACAAATGTGTCCAATGATATCAAGGAGCCTGGTCAAAATTATAAAATCAAAGTTTCTACAACAAATGGCAATGATTTCTTTGGTGATACTGTTCTATTGGGTTGTTTGAAGGCTGGAACTATACACTTCTATCCACCTTTGCTACAATGGAAATGTTTTTCTACGAAGCGTTTTAGTTATGGAACTCTAAATACAACTCTAAATACAGTGGTTTTGGAATTTCCTAATGAAGTTTGGAATTATGCTGGGGACTACTTCGAAGTAACAGATGCGAGGAGAAACAATAGAGGTCAATGCTTTATGTTCTGTAATGTTTGGAATGCAGTTGGGGCTCCTGCCATTATTGCATTAGAAGATTCAGTTCCAGATCCTGTTACATATGTGGTGACTGATTGGGATACTGTTTGGGGGGCGATAATGAGTGGACTACGTGAGTCTGTTCGCAAAATGGATATATTGAGCACTGGGAATGAATATATTGCTGAGTTTGGTCAAGTGGTACTAGCTTGGGAACCGAGATGGTGTGCACCCAGTCCTGAGGCTGTTCTTCCTGCAGCTTGGCCTCTTGATGCAGCTGTTGCTCCACTGAATGATGGTCCATCTTGGTCTCTTGATGCTCCACTATTTGCTCTTGATGCTGCTCCAGCTACAGCTCCATGTGAAGTTGATGGTGGTGCTTCTGCTTCAGATATGGGCCTGCTACCAGATCCTCCAGCACTTGAAGTTCCCCTTGTGTTCTACAAAAAGAGTAAGCAACATTAG 1578 0.4189 MSLGIPHRPPPYNLNDLLTSSARAPAHSGHQLRPSYFQSQPRPFHYQQYFPHLYESYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGSPRMRRQEMQIDKSLNRLSIFLLCSIITNGVEAAGPTERRSDTFSLIGDQLDLGSIMMNNDCLRNDKETEENNSANKPFDSKRNSPLERKLDEDILSSQERRVRDWHFTDLENDCAASLNDVSFSYWNHDKVYRSFGGDHCMIKRGHNFVVEYLGEGITIPLNHFVTNVSNDIKEPGQNYKIKVSTTNGNDFFGDTVLLGCLKAGTIHFYPPLLQWKCFSTKRFSYGTLNTTLNTVVLEFPNEVWNYAGDYFEVTDARRNNRGQCFMFCNVWNAVGAPAIIALEDSVPDPVTYVVTDWDTVWGAIMSGLRESVRKMDILSTGNEYIAEFGQVVLAWEPRWCAPSPEAVLPAAWPLDAAVAPLNDGPSWSLDAPLFALDAAPATAPCEVDGGASASDMGLLPDPPALEVPLVFYKKSKQH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00562 525 Gene3D - 237 329 IPR036188 -
Vimu5g00562 525 Pfam Flavin containing amine oxidoreductase 167 379 IPR002937 GO:0016491
Vimu5g00562 525 SUPERFAMILY FAD/NAD(P)-binding domain 207 417 IPR036188 -
Vimu5g00562 525 Gene3D - 178 379 - -
Vimu5g00562 525 PANTHER FLAVIN MONOAMINE OXIDASE 188 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00562 Vimu-Chr5 6027260 6035701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00562 1 125 C3H Transcription Factor Family AT4G27470 38.095 5.35e-12 64.3