LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g00557	ATGGACCCTGGCTTCGTCGAGATTCCACCTCCTCCGGTGACTACCAACACTCCCAATTCGATGAAGCCGGAAGAGGCCAGAAGGCATGATGTGATTGACATAGATGACGACAATGATTCTACTGAATTAGTATTAGTTGGTGATAAAGTTGGTAAAATTGACAAGGGGAAGGCGATAGCAACAGTTCATGATGATTATGGTGATCATCAAAATATGGAATTGTTAGATGATGTTATGGATAAATCTGGATCAGGTGATGGGCATGATGCTGACAGTTCATGTGATGATGATGACTACTCTGATTTGTTTTCGGATGATTACATTGATGCAGACCAATCTGCTTTAATACAGACACATTTTGATAATGTGGATATACCTCCCGGAATTGAGGTACCTATTCCTTGGATGGCAGAGTATGATCTAGGTTTGAAGAAAACTAACAATCATTCATTGTCTCCTTGGTCTCATACCATGTCTGGTGCTTACGTTTCTCAAGTGACTGATTCATCTCAGCATTTGTTAACATTAGAGCCTTCTAACCTTGAAACTCAAGGACCTTCTGCAGGTAATTCTAATTTGCAAGTTAAAATGAATACTATTAATCAGCACCCTTCTGGAGTAGAGTTATCTTCCCCTCTGGTAAATTGCCTGAGTAAGAAGAAATCAAATGCCTCAAAGCACAGGAGGCATAAGCCAAAGATGGCATTTGGAATGAAGTCATCTAAATCTAATTTATCTACAGGACCTTCTGAGAGTAAAAAGAAGCCTAACATTTTTTATGCTCCAGCTAGCCACATCTTTGTAGACAATTTTGAGGCCAAGAAACTGCCAAATGCAAGTGAGGTACCACAGTGGGGACATTTTGGAAATTCTAAGACAGCTGATGGAAGTAAAACTTTGAATCACCCAAATTTTGTTGGATCTTCTTTTCATTTTCCTGGAGTTGGATTTAATAATGATATGTGGTCGAAGAAAGGTTTTCATTTTCAGCCACTCTCTAATTATACGGTTAAATCAAGTTTTGGTGATCCCTTTGTTCCTTTTAGCGCCGCGCCAGAGCCCTTGTTTGATAACTCTTGGGTTCATTATCCTGGGAGAGATGGAAATAATGGAGCAGCTGCCGAAAGTGCTGTTGTTACAATATCCGATGAAGCCAGAGATGAAATTTTGAGGAAATTTCAAAACTTTAAACAATTTGACACTATTGAAAACCCTTCAGACCATTACTTTCTTAATGCTAGCTGTTCCATGAAAAAGGTTTCACAGAAATGTGCTAAAAGACTCCAGGAAGAGTGGAAGTCATTGGAGAAGGATTTGCCGGATTCAATATTTGTCAGAGTTTATGAATCAAGAATAGATCTTTTGAGGGCAGTAATTATTGGAGCAGAGGGAACACCTTATCATGATGGCCTTTTCTTTTTTGATTTTTTCTTCCCGAGTAGCTATCCCACTGTACCCCCGGACGTCCACTACCACTCTTGTGGGCTTCGACTCAACCCAAATTTATATAGTTCTGGCAAAGTTTGCCTTAGTCTACTTAACACCTGGTCTGGTCATGAGAATGAGAAGTGGCAACCAGGTTTTTCAACAATTTTACAGGTTCTGGTATCTATACAGGGTCTAATCCTGAATTCAGAGCCATACTACAATGAGCCTGGATTTGCCCATCTAATGGGTTCTAAAGAGGGTGCATTTAATTCCTTGCATTACAATGAGAACACATTCATCCTATCATTGAGGACAATGGAGTATATCATGAGAAGACCTCCAAAGGTTTGA	1779	0.3974	MDPGFVEIPPPPVTTNTPNSMKPEEARRHDVIDIDDDNDSTELVLVGDKVGKIDKGKAIATVHDDYGDHQNMELLDDVMDKSGSGDGHDADSSCDDDDYSDLFSDDYIDADQSALIQTHFDNVDIPPGIEVPIPWMAEYDLGLKKTNNHSLSPWSHTMSGAYVSQVTDSSQHLLTLEPSNLETQGPSAGNSNLQVKMNTINQHPSGVELSSPLVNCLSKKKSNASKHRRHKPKMAFGMKSSKSNLSTGPSESKKKPNIFYAPASHIFVDNFEAKKLPNASEVPQWGHFGNSKTADGSKTLNHPNFVGSSFHFPGVGFNNDMWSKKGFHFQPLSNYTVKSSFGDPFVPFSAAPEPLFDNSWVHYPGRDGNNGAAAESAVVTISDEARDEILRKFQNFKQFDTIENPSDHYFLNASCSMKKVSQKCAKRLQEEWKSLEKDLPDSIFVRVYESRIDLLRAVIIGAEGTPYHDGLFFFDFFFPSSYPTVPPDVHYHSCGLRLNPNLYSSGKVCLSLLNTWSGHENEKWQPGFSTILQVLVSIQGLILNSEPYYNEPGFAHLMGSKEGAFNSLHYNENTFILSLRTMEYIMRRPPKV	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g00557	592	ProSiteProfiles	Ubiquitin-conjugating (UBC) core domain profile.	423	583	IPR000608	-
	Vimu5g00557	592	MobiDBLite	consensus disorder prediction	1	17	-	-
	Vimu5g00557	592	Pfam	Ubiquitin-conjugating enzyme	427	551	IPR000608	-
	Vimu5g00557	592	SUPERFAMILY	UBC-like	413	590	IPR016135	-
	Vimu5g00557	592	SMART	ubc_7	426	583	-	-
	Vimu5g00557	592	MobiDBLite	consensus disorder prediction	78	97	-	-
	Vimu5g00557	592	MobiDBLite	consensus disorder prediction	220	253	-	-
	Vimu5g00557	592	Gene3D	Ubiquitin Conjugating Enzyme	382	592	IPR016135	-
	Vimu5g00557	592	PANTHER	(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME	384	591	-	-
	Vimu5g00557	592	MobiDBLite	consensus disorder prediction	221	236	-	-
	Vimu5g00557	592	CDD	UBCc	426	573	IPR000608	-
	Vimu5g00557	592	MobiDBLite	consensus disorder prediction	239	253	-	-
	Vimu5g00557	592	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g00557	Vimu-Chr5	5983366	5987334	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g00557	380	591	Miscellaneous Gene Families	AT2G33770	50.935	2.47e-66	231