Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00556 ATGGACAACAACTGCAGCAACATCATCCACCACCAGCATGAAACCAGAGCAACTTCCACCATCACCATTAAGGGCATTCTCAGCCTTCTAATGGAAAACATTGATGAGAATTTGGATGGTGGAAGCAAGAGAGTCATTTCTCTGGGTATGGGTGACCCAACTCTCACCACATTATTCCACACACCTAAGCTTGTTGAAGAAGCTGTTTCTGACTCTCTTCACTCTCACAAGTTTCATGGCTATGCTCCCACTACTGGTCTGCTCCAGGCTAGAATAGCAATTGCTGAATATCTATCTCGTGACCTTCCTTACCAGTTATCAAGTGATGATATTTTCATCACTTGTGGATGTACACAAGCCATTGATGTTTCAGTGGCGATGCTTGCTCGCCCCGGTGCAAACATCTTGCTTCCAAGACCAGGCTTCCCAATCTATGAACTCAGTGCTGCATTTAGAGGGGTTGAAGTGAGGCATTACGATCTGCTTCCAGAGAAAGGTTGGGAGGTTGATCTAGATGCTGTTGAAGCTCTTGCTGATCAGAACACGGTTGCGTTGGTGATCATAAATCCTGGGAATCCTTGTGGAAATGTGTACAGTTACCATCATTTGGAAAAGATTGCTGAAACTGCAAAACGGGTTGGAACAATTGTGATTTCTGATGAAGTATATGGTCATCTTGCATTTGGGGCAAAGTCATTTGTGCCAATGGGAGTTTTTGGCTCAGTTGTTCCTGTTCTCACTCTTGGCTCACTGTCTAAGAGATGGATAGTTCCTGGATGGAGGCTTGGTTGGTTCGTAACAAATGATCCATCTGGCACTTTTAGAGAACCAAAGGTAGTTGAGCGCATTAAAAAGTATTTTGATCTTCTGGGAGGTCCACCCACTTTCATCCAGGCAGCTGTACCTCAGATAATTGCAAATACTGAAGAGATTTTCTTCAATAAAACCATTGACAATTTGAGGCATACTGCAGATATATGTTGTACAGAGATAAAGGATATTTCATGCATTGTTTGCCCTTACAGACCAGAAGGGTCCATGGCTATGATGGTGAAACTAAATCTTTCACTCCTAGAAGATATTAGTGATGATATAGACTTCTGTTTCAAACTTGCAAAAGAGGAATCTGTAATCATTCTTCCAGGAACTGCAGTTGGGCTAAAAGACTGGCTTCGTATTACCTTTGCTGCTGATCCATGTGCTCTTGGAGAGGGTATGAAAAGGATAAAGTCTTTCTGTCAAAGGCATGCAAGAAAATTGTAA 1263 0.426 MDNNCSNIIHHQHETRATSTITIKGILSLLMENIDENLDGGSKRVISLGMGDPTLTTLFHTPKLVEEAVSDSLHSHKFHGYAPTTGLLQARIAIAEYLSRDLPYQLSSDDIFITCGCTQAIDVSVAMLARPGANILLPRPGFPIYELSAAFRGVEVRHYDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYHHLEKIAETAKRVGTIVISDEVYGHLAFGAKSFVPMGVFGSVVPVLTLGSLSKRWIVPGWRLGWFVTNDPSGTFREPKVVERIKKYFDLLGGPPTFIQAAVPQIIANTEEIFFNKTIDNLRHTADICCTEIKDISCIVCPYRPEGSMAMMVKLNLSLLEDISDDIDFCFKLAKEESVIILPGTAVGLKDWLRITFAADPCALGEGMKRIKSFCQRHARKL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00556 420 FunFam Tyrosine aminotransferase 293 413 - -
Vimu5g00556 420 SUPERFAMILY PLP-dependent transferases 41 415 IPR015424 -
Vimu5g00556 420 CDD AAT_like 46 410 - -
Vimu5g00556 420 PIRSF Tyr_transaminase 2 420 IPR005958 GO:0006520|GO:0008483|GO:0030170
Vimu5g00556 420 Gene3D Aspartate Aminotransferase, domain 1 47 413 IPR015422 GO:0003824
Vimu5g00556 420 NCBIfam tyrosine/nicotianamine family aminotransferase 14 417 IPR005958 GO:0006520|GO:0008483|GO:0030170
Vimu5g00556 420 PANTHER TYROSINE AMINOTRANSFERASE 14 419 - -
Vimu5g00556 420 Pfam Aminotransferase class I and II 44 397 IPR004839 GO:0009058|GO:0030170
Vimu5g00556 420 Gene3D - 64 309 IPR015421 GO:0003824
Vimu5g00556 420 FunFam tyrosine aminotransferase 64 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00556 Vimu-Chr5 5961785 5968986 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00556 5 5961785 5968986 Vimu5g00556 5 5961785 5968986 ECH