Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00555 ATGGAGTGGATTAGGAAATTACTAAGCGCAGATCTCAGGAAAAGAAAAATTTACGAAGCAGTCAAATGTAATGAACCGACCAAGAATCGTCGCATTGCATTCCCAAAAAGGCACAGTAATAAAATCGCAGGCGAAGCGTCACAGTCACTCCCTTCCCTCACAGAAAAAAAGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGGTCGTCCGAGGTAACACACAACCACCCTTTGCGTTTTCCTCGTTCAAAACGCTTCCTTTCCCTGTTTTCGTGGCTGCCCATGATGTTTTTTTGAGATGGGGTTGTCCCGGTGATTGCGTTCTGATGCGGCCATCGGACACGTCGAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAATAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGGGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCTCACACCATAGAAGGAAAATGCGTAGTACACTCTTTCAAGAACTACACCAAGCTGGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACCATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCAGAATGTTCATCTGATGATGATATGAAGAAACCGCAAGCTACATTTTCTGCATCCCCAGGAGCCGATGGCAAGACAGTTGGTTCATTGTTGAGGCACAGTGAGATTTTGCTTTTTGGATTGTGGTTTTATATTATTGGATTTCAAAATTTGAATTTTGCAGGTGGAGCCCAAGCGGCGAAAGAGATGACCATAATGCAGTAG 1005 0.4677 MEWIRKLLSADLRKRKIYEAVKCNEPTKNRRIAFPKRHSNKIAGEASQSLPSLTEKKPGRKDLDSYTIRGTNKVVRGNTQPPFAFSSFKTLPFPVFVAAHDVFLRWGCPGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASPGADGKTVGSLLRHSEILLFGLWFYIIGFQNLNFAGGAQAAKEMTIMQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00555 334 SMART BAH_4 109 220 IPR001025 GO:0003682
Vimu5g00555 334 Pfam PHD-finger 224 272 IPR019787 -
Vimu5g00555 334 FunFam Bromo-adjacent homology (BAH) domain-containing protein 217 288 - -
Vimu5g00555 334 SUPERFAMILY FYVE/PHD zinc finger 216 274 IPR011011 -
Vimu5g00555 334 SMART PHD_3 224 271 IPR001965 -
Vimu5g00555 334 CDD BAH_BAHCC1 109 240 - -
Vimu5g00555 334 PANTHER OS08G0421900 PROTEIN 54 292 - -
Vimu5g00555 334 ProSitePatterns Zinc finger PHD-type signature. 225 270 IPR019786 -
Vimu5g00555 334 Gene3D - 106 216 IPR043151 -
Vimu5g00555 334 ProSiteProfiles Zinc finger PHD-type profile. 222 273 IPR019787 -
Vimu5g00555 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 285 IPR013083 -
Vimu5g00555 334 ProSiteProfiles BAH domain profile. 105 220 IPR001025 GO:0003682
Vimu5g00555 334 Pfam BAH domain 109 219 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00555 Vimu-Chr5 5908958 5912611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00555 115 216 Core DNA Replication Machinery Family AT4G14700 29.126 1.39e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu5g00555 BAH 5.2e-23 No_clan