Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00551 ATGGGGGAATCACAGAACCACCATCTCCTTCACCAAGCACCAACACCGTCTAGATCGGCCATGAGAGCCGGCGCCGGCGGGGGCGAGATCGTGGAGGTGCAAGGCGGCCACATTGTCCGCTCCACCGGGCGGAAGGACCGTCACAGCAAGGTCTGCACTGCCAAAGGCCCCAGAGACCGCCGTGTGCGCCTTGCAGCTCACACGGCCATCCAATTCTACGATGTCCAGGACCGCCTCGGCTATGACCGCCCCAGCAAGGCGGTGGACTGGCTCATAAAAAAAGCCAAGACCGCCATCGACGAGCTCGCGGAGCTCCCTCCATGGAACCCCACGGCCACGTCAATGCAACCGCCGCAGCAGCAGGAAATCGCCCTCCGCGAGAACAAGTCTCTCCCTGTAGAACAAGACCCGACAGCGTTCGGCAACCGTGGCGAGAGCAACGTTGTCGTCCCCGCTACCAGAGTTCCGGAGCAATTCTCTCACCAACAGGTGGAGAGTGAAAATGCTAACATTGGCACCAGCAAGTACAACAGTGGTCCTGGTTTTCTGCCACCGTCTTTGGATACTGATAACATTGCTGAGACAATCAAGACTTTCTTTCCCGTCGAAGCTACCACGACGTCGTTTCAGAGTTACCCTCCGGCGCCACCGGATTTGAGGCAGCAAGATCTGCGTTTATCGTTGCAGTCCTTTCAGGACCCTATCATGCTTCAGCACCAGCCTCAGAGCCACAACGAGCCGGTGCTATTCGCCGGAACGGCGCTCGGCTTCGACGGCGGTTCCGCCTGGTCGGAGCACCAGAACCACCACTCGGAGGAGCACAGGTTGCTCTTTGGTGGCAACAGTGGCCATGGCGGTGGGTTTGTGTTCAACACGCCGGCGCCGGCGTTTGGCCAATTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGGTTCGTGCTTGGATAGACCCTTCGGTCGATCACCACCATCACAACCATCACTACTTCTCGCCGCTGATCCACCAGGGCTCCATCGCCGGCGGCTTCTCCAACGGCGGTGGATTCTCTGGCTTTCGCATTCCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGCGTATCCGACAAGCCGTCCTCTGCTTCCTCAGATTCTCGCCATTGA 1152 0.5885 MGESQNHHLLHQAPTPSRSAMRAGAGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPPWNPTATSMQPPQQQEIALRENKSLPVEQDPTAFGNRGESNVVVPATRVPEQFSHQQVESENANIGTSKYNSGPGFLPPSLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLRQQDLRLSLQSFQDPIMLQHQPQSHNEPVLFAGTALGFDGGSAWSEHQNHHSEEHRLLFGGNSGHGGGFVFNTPAPAFGQFFSQRGPLQSSNTPSVRAWIDPSVDHHHHNHHYFSPLIHQGSIAGGFSNGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00551 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 308 IPR005333 GO:0003700
Vimu5g00551 383 Pfam TCP family transcription factor 43 157 IPR017887 -
Vimu5g00551 383 ProSiteProfiles TCP domain profile. 44 102 IPR017887 -
Vimu5g00551 383 MobiDBLite consensus disorder prediction 360 383 - -
Vimu5g00551 383 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00551 Vimu-Chr5 5817690 5818841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00551 18 383 TCP Transcription Factor Family AT1G53230 50.503 1.64e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu5g00551 TCP 4.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00551 5 5817690 5818841 Vimu4g01134 4 9848660 9850970 PCT