Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00547 ATGTTTGCCAGCCATAGCGTAGTATTTGCAAAGACTAAAAGCTCTGTCACTGAGTTCAGTGGGGCTCTTGATGTGTCTCAAGCTAAAAAGCTTTATAAAACAACCAGCACTCTACTTTCCCTTACGAAGAACACACTACACACCAAACCCAATCGATCTCATTGTTCCAAAGTTTCAGGGAATCAAATGGGGGATCTGATCTTCTCCTTCAAGAGCCAGGAACATGGTCACCAGAGAGCAAAACACAACAAGAAGAGGTTAACCGAGGAGCAGGTTACGATCCTTGAGAAATGCTTTGCTTCCAACATGAAGCTTGAGCCGGAGCAGAAGTTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGATGGACCATGGTGTGCTTCAGGCAAAGCTTGAGAATGTGATGGCCGAAAAGAAGCAGCTCGAGAAAGATGTCGAAAGGCTCAAAGCTGAGCTCAAGAAAGCCCAAGAGATGCTGCTAATCGCTGATGTTGTCAAAGAGGGAGGGAGTTCAGGTGTGGTGCTTGATGATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTGTATGCTTACTTCATGGGTGCAAATTATGGTTCAGGTTTGCATGAGAAAAGGGCATAA 693 0.4618 MFASHSVVFAKTKSSVTEFSGALDVSQAKKLYKTTSTLLSLTKNTLHTKPNRSHCSKVSGNQMGDLIFSFKSQEHGHQRAKHNKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEMDHGVLQAKLENVMAEKKQLEKDVERLKAELKKAQEMLLIADVVKEGGSSGVVLDDHECWQSGEVMQVEELYAYFMGANYGSGLHEKRA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00547 230 FunFam Homeobox-leucine zipper protein ATHB-52 74 140 - -
Vimu5g00547 230 Coils Coil 144 178 - -
Vimu5g00547 230 SMART HOX_1 80 142 IPR001356 GO:0003677
Vimu5g00547 230 Gene3D - 76 144 - -
Vimu5g00547 230 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 186 IPR045224 GO:0003700
Vimu5g00547 230 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Vimu5g00547 230 CDD homeodomain 81 139 IPR001356 GO:0003677
Vimu5g00547 230 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Vimu5g00547 230 SUPERFAMILY Homeodomain-like 72 139 IPR009057 -
Vimu5g00547 230 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00547 Vimu-Chr5 5784673 5785464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00547 74 224 Homeobox Transcription Factor Family AT5G53980 45.455 1.70e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu5g00547 Homeodomain 3.7e-17 CL0123