Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00525 | ATGTCATTTTCTTATGTTCAGACTGAAATGACAACTGCTGAAAGAGAACTCGATCAAAATACTAATTTTGATTGGAATCGAATACAAGAAAGTGGACAAGAAGTATATCCAATTTTTGGACCTGGATATACAGGGTTGGTCAATATTGGAAACAGTTGTTACATGGCAGCAAATATGCAAGTTGTATTTTCAACAAGATCCTTCATATCACGGTACTACTCGAGCCAAAGTCTAAAGAAGGCATTTGAGAGGTCTCCTGCCGATCCAACTGTAGACCTAAATATGCAGCTGACAAAATTGGCACACGGTTTACTTTCTGGCAAATATTCTGTTCCGGCATTTGAAAATGATGAAAAAGAAAACACTGTAACTTCAACTACAACTGCTAAACAAGAAGGGATACGTCCACGGATGTTTAAATCTGTAATAGCTGCCAGCCATCCTGAATTTTCATCTACCCGGCAACAGGATGCTTTAGAATTTTTCCTACATTTTATTGATCAAGTTGAACGAGCTAATACTGGGAAAATTGAACTGGATCCATCAAGGAGTTTCAAATTTGGTATTGAAGATAGAATTTTATGTTCGTCTGGAAAAGTTACATATAATAGAAGGAATGATTACATTCTTTCTCTCAATATCCCGTTACGTGAAGCAACTAACAAAGGAGAGCTAGAATCCTTTCAAAAATTGAAAGAAGAAAGACTTGCAGAAGGAAAAGAAATAAATGCTGATGAGATTGTGCGTCCGAGGGTGCCTTTAGAAACATGCCTTGCAAACTTTTCAGCTCCTGAGGAGATACATGACTTTTACAGTACTGCTTTGAAGACAAAGACTACAGCATTGAAGACTGCAGGTCTGACCTCGTTTCCTGATTACCTGGTGTTACATATGCGGAGATTTGTTATGGAGGCAGGATGGGTGCCCAAAAAACTTGATGTGTATATTGATGTTCCTGATATCATAGATATCAGTCATATGCGCAGCAAAGGTCACCAGCCTGGGGAGGAGCTGTTACCTGATGGAGTTCCTGATGAGGAAGATTCAAACAAAATGTGGGCAAATGAAGAAATTGTAGCCCAGCTGGTTTCCATGGGTTTTAATCATCTCCATTGTCAGAAAGCTGCCATAAATACATCGAATGTTGGAGTAGAAGAGGCAATGAATTGGTTGCTATCTCACATGGAAGATCCAGATATTGACCTTCCTATTTCCAAAGGTCATGGCTCTGAAACTTCGACAATCGTTGACCAATCAAAAGTTGATACTCTAATTTCATTTGGATTTCAAGAAGAAATTGCTAGAAAGGCTCTTGAGGCATCCGGTGGTGACATTGAGAAAGCGACAGATTGGATATTTAACAACCCTAATGCATCAGTCTCCAGTATGGATGCTACCCCATCCACTGCTGCATCCACGTCCAATGATGTTGACCTACCTGATGGAGGAGGGAGATATCGACTTATGGGGATTGTAAGCCACAGTGGAACCTCTACGCTTTGTGGTCACTATGTTGCTCACGTATTAAAAGATGGTAGATGGGCTTTAATTGCTGAATATACAGTGGTTGGCGTTGAACAAGGTGAATACTTCAACCACGTAGACATGTCACCTACATCCGCTGATGTGATAATATTTGCTACACTGGTCTTGGTGGCTTGTTCCATGGAGACTTTAGAAGGACCAAAGGACATAACGAACAAGTCTCAGTTTGAGTGTTCAAATTGCAGATTCCTATTTGTAGTAACTCCTGAGAACGAGTTACTACGCTATGCTAGTTCACTTAAGTTCCTGTTGTATTCTTCATCATGA | 1812 | 0.4007 | MSFSYVQTEMTTAERELDQNTNFDWNRIQESGQEVYPIFGPGYTGLVNIGNSCYMAANMQVVFSTRSFISRYYSSQSLKKAFERSPADPTVDLNMQLTKLAHGLLSGKYSVPAFENDEKENTVTSTTTAKQEGIRPRMFKSVIAASHPEFSSTRQQDALEFFLHFIDQVERANTGKIELDPSRSFKFGIEDRILCSSGKVTYNRRNDYILSLNIPLREATNKGELESFQKLKEERLAEGKEINADEIVRPRVPLETCLANFSAPEEIHDFYSTALKTKTTALKTAGLTSFPDYLVLHMRRFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGHQPGEELLPDGVPDEEDSNKMWANEEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMEDPDIDLPISKGHGSETSTIVDQSKVDTLISFGFQEEIARKALEASGGDIEKATDWIFNNPNASVSSMDATPSTAASTSNDVDLPDGGGRYRLMGIVSHSGTSTLCGHYVAHVLKDGRWALIAEYTVVGVEQGEYFNHVDMSPTSADVIIFATLVLVACSMETLEGPKDITNKSQFECSNCRFLFVVTPENELLRYASSLKFLLYSSS | 603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00525 | 603 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 44 | 549 | IPR028889 | - | |
| Vimu5g00525 | 603 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 395 | 460 | - | - | |
| Vimu5g00525 | 603 | CDD | UBA2_atUBP14 | 419 | 456 | - | - | |
| Vimu5g00525 | 603 | SMART | uba_6 | 417 | 454 | IPR015940 | - | |
| Vimu5g00525 | 603 | SMART | uba_6 | 355 | 393 | IPR015940 | - | |
| Vimu5g00525 | 603 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 44 | 528 | IPR001394 | GO:0004843|GO:0016579 | |
| Vimu5g00525 | 603 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 1. | 45 | 60 | IPR018200 | GO:0004843|GO:0006511 | |
| Vimu5g00525 | 603 | Gene3D | - | 410 | 473 | - | - | |
| Vimu5g00525 | 603 | Gene3D | - | 338 | 409 | - | - | |
| Vimu5g00525 | 603 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 2. | 486 | 504 | IPR018200 | GO:0004843|GO:0006511 | |
| Vimu5g00525 | 603 | CDD | Peptidase_C19B | 45 | 327 | - | - | |
| Vimu5g00525 | 603 | Gene3D | Cysteine proteinases | 37 | 540 | - | - | |
| Vimu5g00525 | 603 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 353 | 394 | - | - | |
| Vimu5g00525 | 603 | Pfam | UBA/TS-N domain | 355 | 391 | IPR015940 | - | |
| Vimu5g00525 | 603 | Pfam | UBA/TS-N domain | 417 | 452 | IPR015940 | - | |
| Vimu5g00525 | 603 | SUPERFAMILY | Cysteine proteinases | 40 | 532 | IPR038765 | - | |
| Vimu5g00525 | 603 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 415 | 455 | IPR015940 | - | |
| Vimu5g00525 | 603 | SUPERFAMILY | UBA-like | 412 | 457 | IPR009060 | GO:0005515 | |
| Vimu5g00525 | 603 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 353 | 394 | IPR015940 | - | |
| Vimu5g00525 | 603 | CDD | UBA1_atUBP14 | 355 | 399 | - | - | |
| Vimu5g00525 | 603 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 37 | 386 | - | - | |
| Vimu5g00525 | 603 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 26 | 517 | - | - |