Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00475 ATGGGAGGTGGATTTAGAGTTCTTCACCTAGTTAGACCGTTTCTCTCATTTCTTCCGGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACTGTGATTGCTCTGTTCATCTTCCTTGTTTGCAGTCAGCTCCCTCTGTATGGAATTCACTCTACAACTGGAGCAGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTAGGAATAACCCCCATTGTGACTTCTGGGCTAGTAATGCAACTCTTGGCTGGGTCCAAGATAATAGAAGTTGACAACAATGTGCGGGAGGATCGTGCTCTCTTAAATGGTGCCCAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGCCAACTTGGAGTGGGAAATGCAATCCTAATTATCCTCCAGCTCTGTTTTGCCGGTATTATTGTGATATGTTTAGATGAGCTCCTTCAGAAAGGGTATGGTTTGGGATCTGGAATTTCTCTATTCATTGCCACGAACATATGTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAATAGTGGACGGGGAGCTGAATTTGAGGGTGCTGTCATAGCTCTATTCCATTTGTTGATAACTAGAACGGATAAGGTTCGAGCCCTTCGAGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGGCAGCAGGGTTCTTATCCAATCAAGCTATTTTATACCTCCAATATGCCCATTATTCTTCAGTCTGCCCTTGTGTCCAATCTCTACTTCATTTCTCAGCTTCTACACAGAAAGTACAGTGGAAACTTCTTTGTTGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCACTCTGTTCCTGTTGGGGGTATTGCATACTACATCACTGCACCTTCCAGCTTAGCTGACATGGCAGCAAATCCTTTCCATGCATTGTTCTACCTTGTGTTTATGTTGTCAGCATGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGGAGCAACAAATGGTAATGCCTGGACATCGGGAGTCAAACCTTCAGAAAGAACTGAACCGATACATTCCCACTGCTGCAGCATTTGGAGGCATATGTATTGGTGCCCTGACTGTGTTGGCTGATTTCATGGGGGCAATTGGTTCAGGGACTGGAATATTGCTTGCAGTGACAATCATCTATCAGTACTTCGAGACATTTGAGAAGGAGAAAGCTAGTGAGCTTGGCTTCTTTGGTTTCTAA 1431 0.4389 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVIALFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVDLLGKWKESEYGGGHSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00475 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Vimu5g00475 476 FunFam Transport Sec61 subunit alpha isoform 2 9 474 - -
Vimu5g00475 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Vimu5g00475 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Vimu5g00475 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 18 470 IPR002208 GO:0015031|GO:0016020
Vimu5g00475 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Vimu5g00475 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Vimu5g00475 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Vimu5g00475 476 NCBIfam preprotein translocase subunit SecY 31 468 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00475 Vimu-Chr5 4795366 4797950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00475 1 476 Miscellaneous Gene Families AT2G34250 93.277 0.0 909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00475 5 4795366 4797950 Vimu5g00475 5 4795366 4797950 ECH